miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 3' -57.5 NC_004065.1 + 115227 0.66 0.926656
Target:  5'- cGCCGGGcuGCUUACCGCCGg-GAa-- -3'
miRNA:   3'- uCGGUCUu-CGAGUGGCGGCagCUcuc -5'
15774 3' -57.5 NC_004065.1 + 79521 0.66 0.926656
Target:  5'- cGCC-GAGGUacgCACgGCCGagCGGGAGa -3'
miRNA:   3'- uCGGuCUUCGa--GUGgCGGCa-GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 167655 0.66 0.92614
Target:  5'- cGCCAccaccccGccGC-CACCGCCGUCGAa-- -3'
miRNA:   3'- uCGGU-------CuuCGaGUGGCGGCAGCUcuc -5'
15774 3' -57.5 NC_004065.1 + 169177 0.66 0.923526
Target:  5'- gGGCCGGucucgaugugaguGUUCGCCGCCGUCc---- -3'
miRNA:   3'- -UCGGUCuu-----------CGAGUGGCGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 126322 0.66 0.921395
Target:  5'- cGCCAGgcGCUCcCCGCCGcccacCGuGuAGg -3'
miRNA:   3'- uCGGUCuuCGAGuGGCGGCa----GCuC-UC- -5'
15774 3' -57.5 NC_004065.1 + 189387 0.66 0.921395
Target:  5'- uGCCGuucGGCgUCACCGUCGcCGAGGa -3'
miRNA:   3'- uCGGUcu-UCG-AGUGGCGGCaGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 94056 0.66 0.921395
Target:  5'- cAGuCCGucAGUUUuCCGCUGUCGAGAa -3'
miRNA:   3'- -UC-GGUcuUCGAGuGGCGGCAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 47364 0.66 0.919773
Target:  5'- uGCCAGAccguaCUCcacaguccagcgcgGCCGCCGUCGGcacGAGa -3'
miRNA:   3'- uCGGUCUuc---GAG--------------UGGCGGCAGCU---CUC- -5'
15774 3' -57.5 NC_004065.1 + 127614 0.66 0.91591
Target:  5'- cGCCGGcucCUC-CCGuCCGUCGAcGAGg -3'
miRNA:   3'- uCGGUCuucGAGuGGC-GGCAGCU-CUC- -5'
15774 3' -57.5 NC_004065.1 + 133632 0.66 0.91591
Target:  5'- cGaCgAGGAGUUCGCCgaGCCGaUCGAGGa -3'
miRNA:   3'- uC-GgUCUUCGAGUGG--CGGC-AGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 104341 0.66 0.91591
Target:  5'- gGGUCAGGGcGCUC--UGCCGgCGAGAGu -3'
miRNA:   3'- -UCGGUCUU-CGAGugGCGGCaGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 81010 0.66 0.91591
Target:  5'- cAGCCcGAGGUUCcgAUCGCCGcagcagaagcUCGAGAc -3'
miRNA:   3'- -UCGGuCUUCGAG--UGGCGGC----------AGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 30979 0.66 0.91591
Target:  5'- gAGUgGGAugcGCUCGCCGC-GUCGGGc- -3'
miRNA:   3'- -UCGgUCUu--CGAGUGGCGgCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 222728 0.66 0.91591
Target:  5'- cGUCAGGAGCUCcUCGCC--CGGGAc -3'
miRNA:   3'- uCGGUCUUCGAGuGGCGGcaGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 121516 0.66 0.910203
Target:  5'- cGGCCG--AGCcgUCGCgGUCGUCGAcGAGg -3'
miRNA:   3'- -UCGGUcuUCG--AGUGgCGGCAGCU-CUC- -5'
15774 3' -57.5 NC_004065.1 + 110069 0.66 0.904276
Target:  5'- aGGUCGGG-GCUCACgGCCGUCc---- -3'
miRNA:   3'- -UCGGUCUuCGAGUGgCGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 145077 0.66 0.904276
Target:  5'- uGCCggGGAAGUgCGCCGCCacCGAGAa -3'
miRNA:   3'- uCGG--UCUUCGaGUGGCGGcaGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 118255 0.66 0.904276
Target:  5'- cGCguGGAGCUCGCCGgCGgccUCGAc-- -3'
miRNA:   3'- uCGguCUUCGAGUGGCgGC---AGCUcuc -5'
15774 3' -57.5 NC_004065.1 + 201547 0.66 0.898131
Target:  5'- cGCCAGAGauCUCGCgGCCGacUCGAGcGa -3'
miRNA:   3'- uCGGUCUUc-GAGUGgCGGC--AGCUCuC- -5'
15774 3' -57.5 NC_004065.1 + 150465 0.66 0.898131
Target:  5'- cGGCCAgGAAGCgccgCugCGCCGcaUCGAc-- -3'
miRNA:   3'- -UCGGU-CUUCGa---GugGCGGC--AGCUcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.