miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 3' -57.5 NC_004065.1 + 139073 1.09 0.003149
Target:  5'- cAGCCAGAAGCUCACCGCCGUCGAGAGg -3'
miRNA:   3'- -UCGGUCUUCGAGUGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 138236 0.82 0.179559
Target:  5'- uGUCgAGgcGCUCGCCGCCGUCGAGGa -3'
miRNA:   3'- uCGG-UCuuCGAGUGGCGGCAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 76378 0.8 0.249908
Target:  5'- cGCCGGcgccgccgcggauGAGCUCGCCGCCGUcCGAGuGg -3'
miRNA:   3'- uCGGUC-------------UUCGAGUGGCGGCA-GCUCuC- -5'
15774 3' -57.5 NC_004065.1 + 27689 0.77 0.365767
Target:  5'- aGGCCGGAGGCUCugauCCGCcCGgcggacCGAGAGc -3'
miRNA:   3'- -UCGGUCUUCGAGu---GGCG-GCa-----GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 99836 0.77 0.372799
Target:  5'- cGGCCAGGcguuucAGCgucugcgccccgaUCGCCGCCGUgCGAGGGg -3'
miRNA:   3'- -UCGGUCU------UCG-------------AGUGGCGGCA-GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 135644 0.77 0.381517
Target:  5'- cAGCCGacAGCUCGCCGCggccguaacgcgCGUCGGGGGg -3'
miRNA:   3'- -UCGGUcuUCGAGUGGCG------------GCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 110191 0.76 0.397713
Target:  5'- cGGCCGcGAcGCgcCGCCGcCCGUCGAGAGg -3'
miRNA:   3'- -UCGGU-CUuCGa-GUGGC-GGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 78356 0.75 0.466689
Target:  5'- cGCUGGcgguaGAGCUCGCUGUCGUUGAGGGc -3'
miRNA:   3'- uCGGUC-----UUCGAGUGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 176060 0.73 0.56067
Target:  5'- gAGCuCGGggGCUCuaCGCCGUCGuuaGGAGa -3'
miRNA:   3'- -UCG-GUCuuCGAGugGCGGCAGC---UCUC- -5'
15774 3' -57.5 NC_004065.1 + 148842 0.73 0.570404
Target:  5'- cGGCCAcGAGGCg-GCCGCCGcgaUCGAGGa -3'
miRNA:   3'- -UCGGU-CUUCGagUGGCGGC---AGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 170453 0.73 0.58999
Target:  5'- cGCCGGAGGCgccuUCGCUGCCGcCGcAGAc -3'
miRNA:   3'- uCGGUCUUCG----AGUGGCGGCaGC-UCUc -5'
15774 3' -57.5 NC_004065.1 + 113543 0.72 0.599828
Target:  5'- gGGCCGGcucAGCUCGcCCGCCuuucuggggaucGUCGAGAa -3'
miRNA:   3'- -UCGGUCu--UCGAGU-GGCGG------------CAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 130869 0.72 0.629451
Target:  5'- cAGCUGGAGGCggccacgguguUUACCGCCGUCGGc-- -3'
miRNA:   3'- -UCGGUCUUCG-----------AGUGGCGGCAGCUcuc -5'
15774 3' -57.5 NC_004065.1 + 119610 0.71 0.65909
Target:  5'- cGGCUGGGAGUUCugUGCCGggaCGGGGa -3'
miRNA:   3'- -UCGGUCUUCGAGugGCGGCa--GCUCUc -5'
15774 3' -57.5 NC_004065.1 + 113628 0.71 0.65909
Target:  5'- gGGCUGGAAGCggaCcCCGUCGUCGAGu- -3'
miRNA:   3'- -UCGGUCUUCGa--GuGGCGGCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 130910 0.71 0.668939
Target:  5'- uGUguGGAGCUCGCCGCCaGgaaGAGAc -3'
miRNA:   3'- uCGguCUUCGAGUGGCGG-Cag-CUCUc -5'
15774 3' -57.5 NC_004065.1 + 211942 0.71 0.67876
Target:  5'- cGGCCAcGAGGCUgcggcggucgcUGCCGCCaucGUCGAGAu -3'
miRNA:   3'- -UCGGU-CUUCGA-----------GUGGCGG---CAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 173892 0.71 0.67876
Target:  5'- cGCC-GAGGCUgcagaaggcgagCGCCGCCGUCGuccGGGa -3'
miRNA:   3'- uCGGuCUUCGA------------GUGGCGGCAGCu--CUC- -5'
15774 3' -57.5 NC_004065.1 + 27759 0.71 0.678761
Target:  5'- cGCCgcgcaucgAGAcGCUgCGCCGCCGUCuGGAGg -3'
miRNA:   3'- uCGG--------UCUuCGA-GUGGCGGCAGcUCUC- -5'
15774 3' -57.5 NC_004065.1 + 109866 0.71 0.678761
Target:  5'- uGCCGGGcggugccaccGGCgUCGCCGCggccgCGUCGGGGGg -3'
miRNA:   3'- uCGGUCU----------UCG-AGUGGCG-----GCAGCUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.