miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 3' -57.5 NC_004065.1 + 111776 0.67 0.89177
Target:  5'- cGCCGGcGAGCUcCACgCGuCCGUCGAcGGc -3'
miRNA:   3'- uCGGUC-UUCGA-GUG-GC-GGCAGCUcUC- -5'
15774 3' -57.5 NC_004065.1 + 86363 0.67 0.89177
Target:  5'- uAGCC-GAGGCUCuCgGCCacGUCGGGGu -3'
miRNA:   3'- -UCGGuCUUCGAGuGgCGG--CAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 83301 0.67 0.891769
Target:  5'- gGGCgAcGGAGCUC-UCGUCGUCGAGc- -3'
miRNA:   3'- -UCGgU-CUUCGAGuGGCGGCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 93962 0.67 0.891769
Target:  5'- cAGCUGGAAGgUCGCgcagaaGCCGcCGGGAa -3'
miRNA:   3'- -UCGGUCUUCgAGUGg-----CGGCaGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 64383 0.67 0.887851
Target:  5'- cGGCCGGAGGgaaUUCACCGacgccgaccuaaagaCgGUCGAGAa -3'
miRNA:   3'- -UCGGUCUUC---GAGUGGC---------------GgCAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 132886 0.67 0.885196
Target:  5'- cGGCCAGAGGgUCGCCuuGUCGUCu---- -3'
miRNA:   3'- -UCGGUCUUCgAGUGG--CGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 203604 0.67 0.885195
Target:  5'- uGCUcucGGAGGC-CGCCGCCGcCGuggcGGAGu -3'
miRNA:   3'- uCGG---UCUUCGaGUGGCGGCaGC----UCUC- -5'
15774 3' -57.5 NC_004065.1 + 217069 0.67 0.878413
Target:  5'- uGCCgAGAAGUUUccaGCCGCCGUCa---- -3'
miRNA:   3'- uCGG-UCUUCGAG---UGGCGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 89712 0.67 0.877723
Target:  5'- cGCCAcccacuuGGAGaUCugCGCCGUCGucAGGGg -3'
miRNA:   3'- uCGGU-------CUUCgAGugGCGGCAGC--UCUC- -5'
15774 3' -57.5 NC_004065.1 + 173251 0.67 0.871425
Target:  5'- uAGCUAGGacGGCg-AUgGCCGUCGAGGa -3'
miRNA:   3'- -UCGGUCU--UCGagUGgCGGCAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 223813 0.67 0.871425
Target:  5'- uAGCUAGcGGCUCGCgGCCGUaggUGuAGAa -3'
miRNA:   3'- -UCGGUCuUCGAGUGgCGGCA---GC-UCUc -5'
15774 3' -57.5 NC_004065.1 + 159677 0.67 0.871425
Target:  5'- uAGCUAcccGAGGCgcuccUCGCCGCCGUCGccgccgauAGAa -3'
miRNA:   3'- -UCGGU---CUUCG-----AGUGGCGGCAGC--------UCUc -5'
15774 3' -57.5 NC_004065.1 + 124260 0.67 0.864237
Target:  5'- cAGCgGGAAGCcgccgucgCACCGCUGguacugCGGGAa -3'
miRNA:   3'- -UCGgUCUUCGa-------GUGGCGGCa-----GCUCUc -5'
15774 3' -57.5 NC_004065.1 + 123999 0.67 0.864237
Target:  5'- cGGCguGuuGaugaUCACCGCCGUCGAc-- -3'
miRNA:   3'- -UCGguCuuCg---AGUGGCGGCAGCUcuc -5'
15774 3' -57.5 NC_004065.1 + 142345 0.68 0.856854
Target:  5'- cGCCGGcGGCgagagCACCGUCagagaugcgGUCGGGGGu -3'
miRNA:   3'- uCGGUCuUCGa----GUGGCGG---------CAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 54093 0.68 0.856854
Target:  5'- gAGCCAG-AGCcauauaCGCCGCCGUCa---- -3'
miRNA:   3'- -UCGGUCuUCGa-----GUGGCGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 167157 0.68 0.856853
Target:  5'- aGGCCAGcAGaccgccacCACCGCUGcCGGGGGa -3'
miRNA:   3'- -UCGGUCuUCga------GUGGCGGCaGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 115157 0.68 0.849281
Target:  5'- cGCCGGccGGCggCACCGUCGUCGccaGGAu -3'
miRNA:   3'- uCGGUCu-UCGa-GUGGCGGCAGC---UCUc -5'
15774 3' -57.5 NC_004065.1 + 114163 0.68 0.840739
Target:  5'- cGCUucccgggacucugAGGAGCgCGCCGCCGgccgCGAGGa -3'
miRNA:   3'- uCGG-------------UCUUCGaGUGGCGGCa---GCUCUc -5'
15774 3' -57.5 NC_004065.1 + 60080 0.68 0.83359
Target:  5'- gGGCCGc--GCUCGUCGUCGUCGaAGAGg -3'
miRNA:   3'- -UCGGUcuuCGAGUGGCGGCAGC-UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.