miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 3' -57.5 NC_004065.1 + 575 0.69 0.812177
Target:  5'- gAGCCGuGAAGCgagcguuccucgagCGCCGCCGuauguuUCGAGGc -3'
miRNA:   3'- -UCGGU-CUUCGa-------------GUGGCGGC------AGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 995 0.7 0.717608
Target:  5'- uGCCu--GGCa-GCCGCUGUCGGGAGa -3'
miRNA:   3'- uCGGucuUCGagUGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 19434 0.69 0.764569
Target:  5'- uGCCGGAGGCaccgCGCUGCUGgCGAuGAGc -3'
miRNA:   3'- uCGGUCUUCGa---GUGGCGGCaGCU-CUC- -5'
15774 3' -57.5 NC_004065.1 + 25912 0.7 0.736655
Target:  5'- gGGCCAGGccaugcgcaGGUUC-CCGCCGgCGaAGAGg -3'
miRNA:   3'- -UCGGUCU---------UCGAGuGGCGGCaGC-UCUC- -5'
15774 3' -57.5 NC_004065.1 + 27689 0.77 0.365767
Target:  5'- aGGCCGGAGGCUCugauCCGCcCGgcggacCGAGAGc -3'
miRNA:   3'- -UCGGUCUUCGAGu---GGCG-GCa-----GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 27759 0.71 0.678761
Target:  5'- cGCCgcgcaucgAGAcGCUgCGCCGCCGUCuGGAGg -3'
miRNA:   3'- uCGG--------UCUuCGA-GUGGCGGCAGcUCUC- -5'
15774 3' -57.5 NC_004065.1 + 30979 0.66 0.91591
Target:  5'- gAGUgGGAugcGCUCGCCGC-GUCGGGc- -3'
miRNA:   3'- -UCGgUCUu--CGAGUGGCGgCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 47364 0.66 0.919773
Target:  5'- uGCCAGAccguaCUCcacaguccagcgcgGCCGCCGUCGGcacGAGa -3'
miRNA:   3'- uCGGUCUuc---GAG--------------UGGCGGCAGCU---CUC- -5'
15774 3' -57.5 NC_004065.1 + 47746 0.69 0.808788
Target:  5'- gGGUCAGAGGC-CAUgGCCGggcagGAGGGg -3'
miRNA:   3'- -UCGGUCUUCGaGUGgCGGCag---CUCUC- -5'
15774 3' -57.5 NC_004065.1 + 48595 0.69 0.808788
Target:  5'- cGGCCuccaGGAGGCUggcgaugaCACCGUCGaCGAGAa -3'
miRNA:   3'- -UCGG----UCUUCGA--------GUGGCGGCaGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 54093 0.68 0.856854
Target:  5'- gAGCCAG-AGCcauauaCGCCGCCGUCa---- -3'
miRNA:   3'- -UCGGUCuUCGa-----GUGGCGGCAGcucuc -5'
15774 3' -57.5 NC_004065.1 + 60080 0.68 0.83359
Target:  5'- gGGCCGc--GCUCGUCGUCGUCGaAGAGg -3'
miRNA:   3'- -UCGGUcuuCGAGUGGCGGCAGC-UCUC- -5'
15774 3' -57.5 NC_004065.1 + 64383 0.67 0.887851
Target:  5'- cGGCCGGAGGgaaUUCACCGacgccgaccuaaagaCgGUCGAGAa -3'
miRNA:   3'- -UCGGUCUUC---GAGUGGC---------------GgCAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 71947 0.7 0.717608
Target:  5'- uGGUCGGAGGCgaCGCCGCCGgu-GGAGc -3'
miRNA:   3'- -UCGGUCUUCGa-GUGGCGGCagcUCUC- -5'
15774 3' -57.5 NC_004065.1 + 76378 0.8 0.249908
Target:  5'- cGCCGGcgccgccgcggauGAGCUCGCCGCCGUcCGAGuGg -3'
miRNA:   3'- uCGGUC-------------UUCGAGUGGCGGCA-GCUCuC- -5'
15774 3' -57.5 NC_004065.1 + 78356 0.75 0.466689
Target:  5'- cGCUGGcgguaGAGCUCGCUGUCGUUGAGGGc -3'
miRNA:   3'- uCGGUC-----UUCGAGUGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 79521 0.66 0.926656
Target:  5'- cGCC-GAGGUacgCACgGCCGagCGGGAGa -3'
miRNA:   3'- uCGGuCUUCGa--GUGgCGGCa-GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 81010 0.66 0.91591
Target:  5'- cAGCCcGAGGUUCcgAUCGCCGcagcagaagcUCGAGAc -3'
miRNA:   3'- -UCGGuCUUCGAG--UGGCGGC----------AGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 83301 0.67 0.891769
Target:  5'- gGGCgAcGGAGCUC-UCGUCGUCGAGc- -3'
miRNA:   3'- -UCGgU-CUUCGAGuGGCGGCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 84160 0.69 0.808788
Target:  5'- gAGCCaAGGAuCUCGaCGCCGUCG-GAGa -3'
miRNA:   3'- -UCGG-UCUUcGAGUgGCGGCAGCuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.