miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 3' -57.5 NC_004065.1 + 86397 0.69 0.764569
Target:  5'- cGGCCuc-AGUUauagACCGCUGUCGGGAGa -3'
miRNA:   3'- -UCGGucuUCGAg---UGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 189866 0.71 0.688546
Target:  5'- cGCgAGggGUUUGCUGCCGUCGGcAGc -3'
miRNA:   3'- uCGgUCuuCGAGUGGCGGCAGCUcUC- -5'
15774 3' -57.5 NC_004065.1 + 109621 0.7 0.707978
Target:  5'- gGGCCGcGguGCcCACCaCCGUCGAGGGc -3'
miRNA:   3'- -UCGGU-CuuCGaGUGGcGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 995 0.7 0.717608
Target:  5'- uGCCu--GGCa-GCCGCUGUCGGGAGa -3'
miRNA:   3'- uCGGucuUCGagUGGCGGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 71947 0.7 0.717608
Target:  5'- uGGUCGGAGGCgaCGCCGCCGgu-GGAGc -3'
miRNA:   3'- -UCGGUCUUCGa-GUGGCGGCagcUCUC- -5'
15774 3' -57.5 NC_004065.1 + 25912 0.7 0.736655
Target:  5'- gGGCCAGGccaugcgcaGGUUC-CCGCCGgCGaAGAGg -3'
miRNA:   3'- -UCGGUCU---------UCGAGuGGCGGCaGC-UCUC- -5'
15774 3' -57.5 NC_004065.1 + 96285 0.7 0.755363
Target:  5'- cGGCCAGggGCgUCACggaCGCCGUCcacacGGAc -3'
miRNA:   3'- -UCGGUCuuCG-AGUG---GCGGCAGc----UCUc -5'
15774 3' -57.5 NC_004065.1 + 88419 0.7 0.755363
Target:  5'- cGCCGGcagcgGAGCcCGCCGCCGUCGc--- -3'
miRNA:   3'- uCGGUC-----UUCGaGUGGCGGCAGCucuc -5'
15774 3' -57.5 NC_004065.1 + 19434 0.69 0.764569
Target:  5'- uGCCGGAGGCaccgCGCUGCUGgCGAuGAGc -3'
miRNA:   3'- uCGGUCUUCGa---GUGGCGGCaGCU-CUC- -5'
15774 3' -57.5 NC_004065.1 + 109866 0.71 0.678761
Target:  5'- uGCCGGGcggugccaccGGCgUCGCCGCggccgCGUCGGGGGg -3'
miRNA:   3'- uCGGUCU----------UCG-AGUGGCG-----GCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 27759 0.71 0.678761
Target:  5'- cGCCgcgcaucgAGAcGCUgCGCCGCCGUCuGGAGg -3'
miRNA:   3'- uCGG--------UCUuCGA-GUGGCGGCAGcUCUC- -5'
15774 3' -57.5 NC_004065.1 + 130910 0.71 0.668939
Target:  5'- uGUguGGAGCUCGCCGCCaGgaaGAGAc -3'
miRNA:   3'- uCGguCUUCGAGUGGCGG-Cag-CUCUc -5'
15774 3' -57.5 NC_004065.1 + 76378 0.8 0.249908
Target:  5'- cGCCGGcgccgccgcggauGAGCUCGCCGCCGUcCGAGuGg -3'
miRNA:   3'- uCGGUC-------------UUCGAGUGGCGGCA-GCUCuC- -5'
15774 3' -57.5 NC_004065.1 + 99836 0.77 0.372799
Target:  5'- cGGCCAGGcguuucAGCgucugcgccccgaUCGCCGCCGUgCGAGGGg -3'
miRNA:   3'- -UCGGUCU------UCG-------------AGUGGCGGCA-GCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 135644 0.77 0.381517
Target:  5'- cAGCCGacAGCUCGCCGCggccguaacgcgCGUCGGGGGg -3'
miRNA:   3'- -UCGGUcuUCGAGUGGCG------------GCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 110191 0.76 0.397713
Target:  5'- cGGCCGcGAcGCgcCGCCGcCCGUCGAGAGg -3'
miRNA:   3'- -UCGGU-CUuCGa-GUGGC-GGCAGCUCUC- -5'
15774 3' -57.5 NC_004065.1 + 170453 0.73 0.58999
Target:  5'- cGCCGGAGGCgccuUCGCUGCCGcCGcAGAc -3'
miRNA:   3'- uCGGUCUUCG----AGUGGCGGCaGC-UCUc -5'
15774 3' -57.5 NC_004065.1 + 113543 0.72 0.599828
Target:  5'- gGGCCGGcucAGCUCGcCCGCCuuucuggggaucGUCGAGAa -3'
miRNA:   3'- -UCGGUCu--UCGAGU-GGCGG------------CAGCUCUc -5'
15774 3' -57.5 NC_004065.1 + 113628 0.71 0.65909
Target:  5'- gGGCUGGAAGCggaCcCCGUCGUCGAGu- -3'
miRNA:   3'- -UCGGUCUUCGa--GuGGCGGCAGCUCuc -5'
15774 3' -57.5 NC_004065.1 + 119610 0.71 0.65909
Target:  5'- cGGCUGGGAGUUCugUGCCGggaCGGGGa -3'
miRNA:   3'- -UCGGUCUUCGAGugGCGGCa--GCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.