miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 5' -58.5 NC_004065.1 + 139281 0.66 0.914476
Target:  5'- -----aCGACauCGGgacgCUGCUCCGAGCg -3'
miRNA:   3'- cugccaGCUGc-GCCa---GACGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 49652 0.66 0.914476
Target:  5'- aGACGGUggaccaguuuccCGugGCGGUgCcGC-CgGAGCa -3'
miRNA:   3'- -CUGCCA------------GCugCGCCA-GaCGaGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 91822 0.66 0.914476
Target:  5'- cGCGGUCGAgaCGuCGGUC-GC-CCGuGGCc -3'
miRNA:   3'- cUGCCAGCU--GC-GCCAGaCGaGGC-UCG- -5'
15774 5' -58.5 NC_004065.1 + 59336 0.66 0.908826
Target:  5'- cGCGGgCGGCGUGcGaUUUccaGCUCCGAGUg -3'
miRNA:   3'- cUGCCaGCUGCGC-C-AGA---CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 101117 0.66 0.908826
Target:  5'- cGCGaaCcGCGCGGUCUGCUUgcggaaccgCGAGCc -3'
miRNA:   3'- cUGCcaGcUGCGCCAGACGAG---------GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 195847 0.66 0.908826
Target:  5'- uGGCGc-CGGCGCcgucaacucacGGUCUGCagagUCUGAGCg -3'
miRNA:   3'- -CUGCcaGCUGCG-----------CCAGACG----AGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 139387 0.66 0.908826
Target:  5'- cGCGGUCuGAUGgGGUCgcgacgGC-CCGcGCg -3'
miRNA:   3'- cUGCCAG-CUGCgCCAGa-----CGaGGCuCG- -5'
15774 5' -58.5 NC_004065.1 + 200110 0.66 0.902965
Target:  5'- uGACGaagaCGGCGuCGGUCcGCUCCuggugacaGAGCa -3'
miRNA:   3'- -CUGCca--GCUGC-GCCAGaCGAGG--------CUCG- -5'
15774 5' -58.5 NC_004065.1 + 4345 0.66 0.902965
Target:  5'- aACGGUCGACcccaaaCGG-CUGCgcgUgGAGCg -3'
miRNA:   3'- cUGCCAGCUGc-----GCCaGACGa--GgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 26796 0.66 0.902965
Target:  5'- uACGGcgUGAUGaCaGUC-GCUCCGAGCc -3'
miRNA:   3'- cUGCCa-GCUGC-GcCAGaCGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 223224 0.66 0.902965
Target:  5'- cGGCGGUagcggCGACGCGGUCU--UCUGGa- -3'
miRNA:   3'- -CUGCCA-----GCUGCGCCAGAcgAGGCUcg -5'
15774 5' -58.5 NC_004065.1 + 100529 0.66 0.896894
Target:  5'- -cUGGUCGAUGCuGGUCacguaggccaGCUCUuuGAGCa -3'
miRNA:   3'- cuGCCAGCUGCG-CCAGa---------CGAGG--CUCG- -5'
15774 5' -58.5 NC_004065.1 + 130190 0.66 0.896894
Target:  5'- -cUGGUgCGACGgGGcCgUGCUCaUGAGCg -3'
miRNA:   3'- cuGCCA-GCUGCgCCaG-ACGAG-GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 168569 0.66 0.890617
Target:  5'- cGGCGG-CGACaGCGGgcgUCUcgGC-CCGAGUg -3'
miRNA:   3'- -CUGCCaGCUG-CGCC---AGA--CGaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 30389 0.66 0.890617
Target:  5'- aACGGcCGuACGCGGUCUGgUa-GAGUu -3'
miRNA:   3'- cUGCCaGC-UGCGCCAGACgAggCUCG- -5'
15774 5' -58.5 NC_004065.1 + 101881 0.66 0.890617
Target:  5'- aGACGa-CGACGcCGGggcggCUcCUCCGAGCu -3'
miRNA:   3'- -CUGCcaGCUGC-GCCa----GAcGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 182578 0.66 0.890617
Target:  5'- uGGCGGaUgGGCGUGGUCccaauaGaaCCGAGCg -3'
miRNA:   3'- -CUGCC-AgCUGCGCCAGa-----CgaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 67342 0.66 0.889337
Target:  5'- -cCGGUCGaauggcgcuccggacGCGCGGUCgaGCUCUagacacgccuaggcuGGGCg -3'
miRNA:   3'- cuGCCAGC---------------UGCGCCAGa-CGAGG---------------CUCG- -5'
15774 5' -58.5 NC_004065.1 + 193167 0.67 0.884135
Target:  5'- gGGCGG-CGAUGCGcGuUCUGUUUCuGGCg -3'
miRNA:   3'- -CUGCCaGCUGCGC-C-AGACGAGGcUCG- -5'
15774 5' -58.5 NC_004065.1 + 99566 0.67 0.877453
Target:  5'- gGACGGcCGugGUGcGUCagGUUCUGGGg -3'
miRNA:   3'- -CUGCCaGCugCGC-CAGa-CGAGGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.