miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 5' -58.5 NC_004065.1 + 139111 1.1 0.00246
Target:  5'- uGACGGUCGACGCGGUCUGCUCCGAGCu -3'
miRNA:   3'- -CUGCCAGCUGCGCCAGACGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 127881 0.75 0.446986
Target:  5'- aGACGGUCGAgcCG-GGUCUGCcUCCGcacgcAGCg -3'
miRNA:   3'- -CUGCCAGCU--GCgCCAGACG-AGGC-----UCG- -5'
15774 5' -58.5 NC_004065.1 + 119174 0.72 0.594703
Target:  5'- cGACGGuUCGACGCGGgcgGC-CCGcGCc -3'
miRNA:   3'- -CUGCC-AGCUGCGCCagaCGaGGCuCG- -5'
15774 5' -58.5 NC_004065.1 + 213879 0.72 0.604362
Target:  5'- uGGCGGgcaGACGCGGgguUCUGgUCUGGGUc -3'
miRNA:   3'- -CUGCCag-CUGCGCC---AGACgAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 200991 0.71 0.643121
Target:  5'- uGACGGgucgCGACGcCGGUCUGaCU-CGAGg -3'
miRNA:   3'- -CUGCCa---GCUGC-GCCAGAC-GAgGCUCg -5'
15774 5' -58.5 NC_004065.1 + 45928 0.71 0.643121
Target:  5'- --gGGUCGuaucgagcCGCGGUCcguccUGCUCUGGGCu -3'
miRNA:   3'- cugCCAGCu-------GCGCCAG-----ACGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 4378 0.71 0.662481
Target:  5'- cGACGG-CGGCgGCGGgagccggagugCUGUUCgGAGCg -3'
miRNA:   3'- -CUGCCaGCUG-CGCCa----------GACGAGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 79550 0.71 0.670204
Target:  5'- aGGCGGUCGAUGCGGcgCaGCggcgcuuccuggCCGAGg -3'
miRNA:   3'- -CUGCCAGCUGCGCCa-GaCGa-----------GGCUCg -5'
15774 5' -58.5 NC_004065.1 + 214633 0.71 0.672132
Target:  5'- cGAUGGUUaGACGCGGUCUuGUgUCCGAa- -3'
miRNA:   3'- -CUGCCAG-CUGCGCCAGA-CG-AGGCUcg -5'
15774 5' -58.5 NC_004065.1 + 62342 0.71 0.681753
Target:  5'- aGACGG-CGACGaucacugaCGcGUCgcggGUUCCGAGCa -3'
miRNA:   3'- -CUGCCaGCUGC--------GC-CAGa---CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 123500 0.7 0.719795
Target:  5'- -uUGGUCGACaCGaacGUCUGCgggUCCGGGCu -3'
miRNA:   3'- cuGCCAGCUGcGC---CAGACG---AGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 61383 0.7 0.719795
Target:  5'- cGACGGUCGcCGCGccg-GCUCCGcccgcGGCa -3'
miRNA:   3'- -CUGCCAGCuGCGCcagaCGAGGC-----UCG- -5'
15774 5' -58.5 NC_004065.1 + 72476 0.7 0.729157
Target:  5'- aGACGGugUCGGCGCGG-CUGaagaCCGGGg -3'
miRNA:   3'- -CUGCC--AGCUGCGCCaGACga--GGCUCg -5'
15774 5' -58.5 NC_004065.1 + 208880 0.7 0.738443
Target:  5'- gGACGGU--GCGCGGUgacggaCUGaguuCUCCGGGCg -3'
miRNA:   3'- -CUGCCAgcUGCGCCA------GAC----GAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 54454 0.7 0.738443
Target:  5'- cGCuGuUCGcGCGCGGUCUGC-CgCGAGCg -3'
miRNA:   3'- cUGcC-AGC-UGCGCCAGACGaG-GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 90997 0.69 0.744894
Target:  5'- gGACGGacugcagcgucuucUUGACGCGGUCcaugGCcaccgucCCGAGCu -3'
miRNA:   3'- -CUGCC--------------AGCUGCGCCAGa---CGa------GGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 62869 0.69 0.747646
Target:  5'- aGCGGU-GugGCGGUCUGCUggccucccugcCCGucgucaGGCa -3'
miRNA:   3'- cUGCCAgCugCGCCAGACGA-----------GGC------UCG- -5'
15774 5' -58.5 NC_004065.1 + 153356 0.69 0.747646
Target:  5'- cGGCGGcgcCGACGCGaUCcGUUUCGAGCc -3'
miRNA:   3'- -CUGCCa--GCUGCGCcAGaCGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 59640 0.69 0.765771
Target:  5'- -uCGGUCGACaCGGUCcagccgGuCUCgGAGCa -3'
miRNA:   3'- cuGCCAGCUGcGCCAGa-----C-GAGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 225180 0.69 0.78347
Target:  5'- cGGCGGUgGugGUGGUUuucuucgguuUGCUacagucuaCGAGCg -3'
miRNA:   3'- -CUGCCAgCugCGCCAG----------ACGAg-------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.