miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 5' -58.5 NC_004065.1 + 47854 0.67 0.877453
Target:  5'- uGAUGGUCccucuuccauGGCcGCGGUgUGCUUCGGuGCc -3'
miRNA:   3'- -CUGCCAG----------CUG-CGCCAgACGAGGCU-CG- -5'
15774 5' -58.5 NC_004065.1 + 99566 0.67 0.877453
Target:  5'- gGACGGcCGugGUGcGUCagGUUCUGGGg -3'
miRNA:   3'- -CUGCCaGCugCGC-CAGa-CGAGGCUCg -5'
15774 5' -58.5 NC_004065.1 + 138568 0.67 0.870575
Target:  5'- uGACGG-CGACgguGCcGUCcGCUCCGGGa -3'
miRNA:   3'- -CUGCCaGCUG---CGcCAGaCGAGGCUCg -5'
15774 5' -58.5 NC_004065.1 + 138766 0.67 0.863504
Target:  5'- --aGGUCGGCGCGGUCgaugGCgUCaaGGUc -3'
miRNA:   3'- cugCCAGCUGCGCCAGa---CG-AGgcUCG- -5'
15774 5' -58.5 NC_004065.1 + 197786 0.67 0.863504
Target:  5'- uGAUGG-CGGCGa-GUCcgacgGCUCCGAGUu -3'
miRNA:   3'- -CUGCCaGCUGCgcCAGa----CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 30669 0.67 0.863504
Target:  5'- aGACGuUCGACGCGGagagcaaggagCUGgUCCGucGCg -3'
miRNA:   3'- -CUGCcAGCUGCGCCa----------GACgAGGCu-CG- -5'
15774 5' -58.5 NC_004065.1 + 212959 0.67 0.856247
Target:  5'- uGGCGGUCGGagagGCGGUaguccCUGUUCUcAGCc -3'
miRNA:   3'- -CUGCCAGCUg---CGCCA-----GACGAGGcUCG- -5'
15774 5' -58.5 NC_004065.1 + 74135 0.67 0.856247
Target:  5'- gGAC-GUCGAgGCGGg-UGC-CCGGGCc -3'
miRNA:   3'- -CUGcCAGCUgCGCCagACGaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 122691 0.67 0.856246
Target:  5'- cGCGGacaCGAgCGUGuGUCUGCgggugCUGAGCg -3'
miRNA:   3'- cUGCCa--GCU-GCGC-CAGACGa----GGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 186905 0.67 0.856246
Target:  5'- cGGCGGUCuucgcgaGCGCGGaUCgGCgCCGGGUc -3'
miRNA:   3'- -CUGCCAGc------UGCGCC-AGaCGaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 105567 0.67 0.856246
Target:  5'- aGCGGcaCGGCGCGccGUCggcggGCUUCGAGUc -3'
miRNA:   3'- cUGCCa-GCUGCGC--CAGa----CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 65468 0.67 0.855511
Target:  5'- aGCGGUCGGCGCcGcCgccgGCUCgacacagCGAGCu -3'
miRNA:   3'- cUGCCAGCUGCGcCaGa---CGAG-------GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 192996 0.67 0.854033
Target:  5'- cGACGGUCGACucucuggcggGCGGUagcggucuuuauaagGCUUCGGGa -3'
miRNA:   3'- -CUGCCAGCUG----------CGCCAga-------------CGAGGCUCg -5'
15774 5' -58.5 NC_004065.1 + 114010 0.67 0.848807
Target:  5'- cACGGUCGACGaCGGUUacaucgCgGAGCg -3'
miRNA:   3'- cUGCCAGCUGC-GCCAGacga--GgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 173929 0.68 0.841191
Target:  5'- gGACGGUC-ACGU---CUGCUgCGAGCa -3'
miRNA:   3'- -CUGCCAGcUGCGccaGACGAgGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 141389 0.68 0.841191
Target:  5'- cGACGGggcUCGACGUGGaUCccgaGCUggcggccaucgCCGAGCu -3'
miRNA:   3'- -CUGCC---AGCUGCGCC-AGa---CGA-----------GGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 120559 0.68 0.833404
Target:  5'- cGGCGGUCGGCGCGaGcgggCgggacCUCCG-GCg -3'
miRNA:   3'- -CUGCCAGCUGCGC-Ca---Gac---GAGGCuCG- -5'
15774 5' -58.5 NC_004065.1 + 220743 0.68 0.825453
Target:  5'- cGCGGUCGGCGUGugcgacGUCUGCaUCUcuGCa -3'
miRNA:   3'- cUGCCAGCUGCGC------CAGACG-AGGcuCG- -5'
15774 5' -58.5 NC_004065.1 + 35924 0.68 0.825453
Target:  5'- cGCGGUcugCGACGCcucccuGUCgUGCUCCGAccGCg -3'
miRNA:   3'- cUGCCA---GCUGCGc-----CAG-ACGAGGCU--CG- -5'
15774 5' -58.5 NC_004065.1 + 92172 0.69 0.78347
Target:  5'- cGGCGGcgaUCGACGCGGUCaaGUUUC-AGCc -3'
miRNA:   3'- -CUGCC---AGCUGCGCCAGa-CGAGGcUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.