miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 5' -58.5 NC_004065.1 + 4345 0.66 0.902965
Target:  5'- aACGGUCGACcccaaaCGG-CUGCgcgUgGAGCg -3'
miRNA:   3'- cUGCCAGCUGc-----GCCaGACGa--GgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 4378 0.71 0.662481
Target:  5'- cGACGG-CGGCgGCGGgagccggagugCUGUUCgGAGCg -3'
miRNA:   3'- -CUGCCaGCUG-CGCCa----------GACGAGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 26796 0.66 0.902965
Target:  5'- uACGGcgUGAUGaCaGUC-GCUCCGAGCc -3'
miRNA:   3'- cUGCCa-GCUGC-GcCAGaCGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 30389 0.66 0.890617
Target:  5'- aACGGcCGuACGCGGUCUGgUa-GAGUu -3'
miRNA:   3'- cUGCCaGC-UGCGCCAGACgAggCUCG- -5'
15774 5' -58.5 NC_004065.1 + 30669 0.67 0.863504
Target:  5'- aGACGuUCGACGCGGagagcaaggagCUGgUCCGucGCg -3'
miRNA:   3'- -CUGCcAGCUGCGCCa----------GACgAGGCu-CG- -5'
15774 5' -58.5 NC_004065.1 + 35924 0.68 0.825453
Target:  5'- cGCGGUcugCGACGCcucccuGUCgUGCUCCGAccGCg -3'
miRNA:   3'- cUGCCA---GCUGCGc-----CAG-ACGAGGCU--CG- -5'
15774 5' -58.5 NC_004065.1 + 43995 0.67 0.877453
Target:  5'- cACGGUCG-CGgGGUCccugUGCUCCaGGa -3'
miRNA:   3'- cUGCCAGCuGCgCCAG----ACGAGGcUCg -5'
15774 5' -58.5 NC_004065.1 + 45928 0.71 0.643121
Target:  5'- --gGGUCGuaucgagcCGCGGUCcguccUGCUCUGGGCu -3'
miRNA:   3'- cugCCAGCu-------GCGCCAG-----ACGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 47854 0.67 0.877453
Target:  5'- uGAUGGUCccucuuccauGGCcGCGGUgUGCUUCGGuGCc -3'
miRNA:   3'- -CUGCCAG----------CUG-CGCCAgACGAGGCU-CG- -5'
15774 5' -58.5 NC_004065.1 + 49652 0.66 0.914476
Target:  5'- aGACGGUggaccaguuuccCGugGCGGUgCcGC-CgGAGCa -3'
miRNA:   3'- -CUGCCA------------GCugCGCCA-GaCGaGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 54454 0.7 0.738443
Target:  5'- cGCuGuUCGcGCGCGGUCUGC-CgCGAGCg -3'
miRNA:   3'- cUGcC-AGC-UGCGCCAGACGaG-GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 59336 0.66 0.908826
Target:  5'- cGCGGgCGGCGUGcGaUUUccaGCUCCGAGUg -3'
miRNA:   3'- cUGCCaGCUGCGC-C-AGA---CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 59640 0.69 0.765771
Target:  5'- -uCGGUCGACaCGGUCcagccgGuCUCgGAGCa -3'
miRNA:   3'- cuGCCAGCUGcGCCAGa-----C-GAGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 61383 0.7 0.719795
Target:  5'- cGACGGUCGcCGCGccg-GCUCCGcccgcGGCa -3'
miRNA:   3'- -CUGCCAGCuGCGCcagaCGAGGC-----UCG- -5'
15774 5' -58.5 NC_004065.1 + 62342 0.71 0.681753
Target:  5'- aGACGG-CGACGaucacugaCGcGUCgcggGUUCCGAGCa -3'
miRNA:   3'- -CUGCCaGCUGC--------GC-CAGa---CGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 62869 0.69 0.747646
Target:  5'- aGCGGU-GugGCGGUCUGCUggccucccugcCCGucgucaGGCa -3'
miRNA:   3'- cUGCCAgCugCGCCAGACGA-----------GGC------UCG- -5'
15774 5' -58.5 NC_004065.1 + 65468 0.67 0.855511
Target:  5'- aGCGGUCGGCGCcGcCgccgGCUCgacacagCGAGCu -3'
miRNA:   3'- cUGCCAGCUGCGcCaGa---CGAG-------GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 67342 0.66 0.889337
Target:  5'- -cCGGUCGaauggcgcuccggacGCGCGGUCgaGCUCUagacacgccuaggcuGGGCg -3'
miRNA:   3'- cuGCCAGC---------------UGCGCCAGa-CGAGG---------------CUCG- -5'
15774 5' -58.5 NC_004065.1 + 72476 0.7 0.729157
Target:  5'- aGACGGugUCGGCGCGG-CUGaagaCCGGGg -3'
miRNA:   3'- -CUGCC--AGCUGCGCCaGACga--GGCUCg -5'
15774 5' -58.5 NC_004065.1 + 74135 0.67 0.856247
Target:  5'- gGAC-GUCGAgGCGGg-UGC-CCGGGCc -3'
miRNA:   3'- -CUGcCAGCUgCGCCagACGaGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.