miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15774 5' -58.5 NC_004065.1 + 26796 0.66 0.902965
Target:  5'- uACGGcgUGAUGaCaGUC-GCUCCGAGCc -3'
miRNA:   3'- cUGCCa-GCUGC-GcCAGaCGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 212959 0.67 0.856247
Target:  5'- uGGCGGUCGGagagGCGGUaguccCUGUUCUcAGCc -3'
miRNA:   3'- -CUGCCAGCUg---CGCCA-----GACGAGGcUCG- -5'
15774 5' -58.5 NC_004065.1 + 138568 0.67 0.870575
Target:  5'- uGACGG-CGACgguGCcGUCcGCUCCGGGa -3'
miRNA:   3'- -CUGCCaGCUG---CGcCAGaCGAGGCUCg -5'
15774 5' -58.5 NC_004065.1 + 99566 0.67 0.877453
Target:  5'- gGACGGcCGugGUGcGUCagGUUCUGGGg -3'
miRNA:   3'- -CUGCCaGCugCGC-CAGa-CGAGGCUCg -5'
15774 5' -58.5 NC_004065.1 + 182578 0.66 0.890617
Target:  5'- uGGCGGaUgGGCGUGGUCccaauaGaaCCGAGCg -3'
miRNA:   3'- -CUGCC-AgCUGCGCCAGa-----CgaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 101881 0.66 0.890617
Target:  5'- aGACGa-CGACGcCGGggcggCUcCUCCGAGCu -3'
miRNA:   3'- -CUGCcaGCUGC-GCCa----GAcGAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 30389 0.66 0.890617
Target:  5'- aACGGcCGuACGCGGUCUGgUa-GAGUu -3'
miRNA:   3'- cUGCCaGC-UGCGCCAGACgAggCUCG- -5'
15774 5' -58.5 NC_004065.1 + 168569 0.66 0.890617
Target:  5'- cGGCGG-CGACaGCGGgcgUCUcgGC-CCGAGUg -3'
miRNA:   3'- -CUGCCaGCUG-CGCC---AGA--CGaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 130190 0.66 0.896894
Target:  5'- -cUGGUgCGACGgGGcCgUGCUCaUGAGCg -3'
miRNA:   3'- cuGCCA-GCUGCgCCaG-ACGAG-GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 74135 0.67 0.856247
Target:  5'- gGAC-GUCGAgGCGGg-UGC-CCGGGCc -3'
miRNA:   3'- -CUGcCAGCUgCGCCagACGaGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 114010 0.67 0.848807
Target:  5'- cACGGUCGACGaCGGUUacaucgCgGAGCg -3'
miRNA:   3'- cUGCCAGCUGC-GCCAGacga--GgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 120559 0.68 0.833404
Target:  5'- cGGCGGUCGGCGCGaGcgggCgggacCUCCG-GCg -3'
miRNA:   3'- -CUGCCAGCUGCGC-Ca---Gac---GAGGCuCG- -5'
15774 5' -58.5 NC_004065.1 + 200991 0.71 0.643121
Target:  5'- uGACGGgucgCGACGcCGGUCUGaCU-CGAGg -3'
miRNA:   3'- -CUGCCa---GCUGC-GCCAGAC-GAgGCUCg -5'
15774 5' -58.5 NC_004065.1 + 123500 0.7 0.719795
Target:  5'- -uUGGUCGACaCGaacGUCUGCgggUCCGGGCu -3'
miRNA:   3'- cuGCCAGCUGcGC---CAGACG---AGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 72476 0.7 0.729157
Target:  5'- aGACGGugUCGGCGCGG-CUGaagaCCGGGg -3'
miRNA:   3'- -CUGCC--AGCUGCGCCaGACga--GGCUCg -5'
15774 5' -58.5 NC_004065.1 + 54454 0.7 0.738443
Target:  5'- cGCuGuUCGcGCGCGGUCUGC-CgCGAGCg -3'
miRNA:   3'- cUGcC-AGC-UGCGCCAGACGaG-GCUCG- -5'
15774 5' -58.5 NC_004065.1 + 208880 0.7 0.738443
Target:  5'- gGACGGU--GCGCGGUgacggaCUGaguuCUCCGGGCg -3'
miRNA:   3'- -CUGCCAgcUGCGCCA------GAC----GAGGCUCG- -5'
15774 5' -58.5 NC_004065.1 + 62869 0.69 0.747646
Target:  5'- aGCGGU-GugGCGGUCUGCUggccucccugcCCGucgucaGGCa -3'
miRNA:   3'- cUGCCAgCugCGCCAGACGA-----------GGC------UCG- -5'
15774 5' -58.5 NC_004065.1 + 59640 0.69 0.765771
Target:  5'- -uCGGUCGACaCGGUCcagccgGuCUCgGAGCa -3'
miRNA:   3'- cuGCCAGCUGcGCCAGa-----C-GAGgCUCG- -5'
15774 5' -58.5 NC_004065.1 + 225180 0.69 0.78347
Target:  5'- cGGCGGUgGugGUGGUUuucuucgguuUGCUacagucuaCGAGCg -3'
miRNA:   3'- -CUGCCAgCugCGCCAG----------ACGAg-------GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.