miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15775 5' -53.7 NC_004065.1 + 148463 0.66 0.989519
Target:  5'- uUCUGgAGCGGUagcaUCGUCcucGACAUGUa -3'
miRNA:   3'- -AGACgUCGUCA----AGCAGcucCUGUGCG- -5'
15775 5' -53.7 NC_004065.1 + 109274 0.66 0.989519
Target:  5'- cUCgcgGCAGCAGUgUC-UCuGGGuCACGCc -3'
miRNA:   3'- -AGa--CGUCGUCA-AGcAGcUCCuGUGCG- -5'
15775 5' -53.7 NC_004065.1 + 152302 0.66 0.989519
Target:  5'- cCUGCGGCGGcggCGgugccggCGGGGACGaugacgGCu -3'
miRNA:   3'- aGACGUCGUCaa-GCa------GCUCCUGUg-----CG- -5'
15775 5' -53.7 NC_004065.1 + 112289 0.66 0.989519
Target:  5'- cCUGCAGCAGUUCaaucuGGACAa-- -3'
miRNA:   3'- aGACGUCGUCAAGcagcuCCUGUgcg -5'
15775 5' -53.7 NC_004065.1 + 80436 0.66 0.989387
Target:  5'- gUCUGCAacagcuucuucucGCAGUUCGUacccgacgagcgCGAgucGGACgaGCGCc -3'
miRNA:   3'- -AGACGU-------------CGUCAAGCA------------GCU---CCUG--UGCG- -5'
15775 5' -53.7 NC_004065.1 + 30888 0.66 0.988144
Target:  5'- --aGCGcccGCAGggCGUCGGGGu--CGCa -3'
miRNA:   3'- agaCGU---CGUCaaGCAGCUCCuguGCG- -5'
15775 5' -53.7 NC_004065.1 + 25695 0.66 0.988144
Target:  5'- --gGUAGUAGauggcgUCGUcCGGGGGCcCGCg -3'
miRNA:   3'- agaCGUCGUCa-----AGCA-GCUCCUGuGCG- -5'
15775 5' -53.7 NC_004065.1 + 209072 0.66 0.986633
Target:  5'- cCUGCGucuucaCAGUg-GUCGAGGACcaguGCGCc -3'
miRNA:   3'- aGACGUc-----GUCAagCAGCUCCUG----UGCG- -5'
15775 5' -53.7 NC_004065.1 + 199191 0.66 0.986633
Target:  5'- gUCgGCuucGUcgAGggUCG-CGAGGACGCGCa -3'
miRNA:   3'- -AGaCGu--CG--UCa-AGCaGCUCCUGUGCG- -5'
15775 5' -53.7 NC_004065.1 + 124391 0.66 0.986633
Target:  5'- cCUGCAGCAGcUUCGgcacGGucguCAUGCa -3'
miRNA:   3'- aGACGUCGUC-AAGCagcuCCu---GUGCG- -5'
15775 5' -53.7 NC_004065.1 + 18740 0.66 0.986633
Target:  5'- --aGCAGCAGUgacaGUagCGGGGACgACGa -3'
miRNA:   3'- agaCGUCGUCAag--CA--GCUCCUG-UGCg -5'
15775 5' -53.7 NC_004065.1 + 186559 0.66 0.984978
Target:  5'- cUCUGCAGguGcgacaaCGUCuacaccGAGGACggcgGCGCu -3'
miRNA:   3'- -AGACGUCguCaa----GCAG------CUCCUG----UGCG- -5'
15775 5' -53.7 NC_004065.1 + 102141 0.66 0.984978
Target:  5'- --gGC-GCAG-UCGUCGAucucGGGCACGg -3'
miRNA:   3'- agaCGuCGUCaAGCAGCU----CCUGUGCg -5'
15775 5' -53.7 NC_004065.1 + 138711 0.66 0.984978
Target:  5'- aUCgUGgAGCGGUccUCagguUCGuGGACACGCc -3'
miRNA:   3'- -AG-ACgUCGUCA--AGc---AGCuCCUGUGCG- -5'
15775 5' -53.7 NC_004065.1 + 132895 0.66 0.983172
Target:  5'- --aGCAGCAGUccUCGU-GuGGACA-GCa -3'
miRNA:   3'- agaCGUCGUCA--AGCAgCuCCUGUgCG- -5'
15775 5' -53.7 NC_004065.1 + 132113 0.66 0.983172
Target:  5'- --cGCGGCGGU---UCGAGGugAaCGCc -3'
miRNA:   3'- agaCGUCGUCAagcAGCUCCugU-GCG- -5'
15775 5' -53.7 NC_004065.1 + 78469 0.66 0.983172
Target:  5'- gCUGCGGCAGaggUCGUCGGuGucCuuGCg -3'
miRNA:   3'- aGACGUCGUCa--AGCAGCU-CcuGugCG- -5'
15775 5' -53.7 NC_004065.1 + 82618 0.66 0.983172
Target:  5'- gCUGCuggacGCGGUUgCGUcCGGGGGCgaaccucuGCGCc -3'
miRNA:   3'- aGACGu----CGUCAA-GCA-GCUCCUG--------UGCG- -5'
15775 5' -53.7 NC_004065.1 + 86686 0.66 0.983172
Target:  5'- ----gGGUAGUUCGUCGGGaGACAuacguucgggauCGCg -3'
miRNA:   3'- agacgUCGUCAAGCAGCUC-CUGU------------GCG- -5'
15775 5' -53.7 NC_004065.1 + 128574 0.66 0.982982
Target:  5'- --aGCGGCAGcgaCGUCGGcGGcgaaggcgcauccGCACGCg -3'
miRNA:   3'- agaCGUCGUCaa-GCAGCU-CC-------------UGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.