miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15776 5' -55.6 NC_004065.1 + 150784 0.66 0.967678
Target:  5'- --cGCGCCgucagcgugauccgCUgGUGcGCGAUGuCCAGGCu -3'
miRNA:   3'- gcaCGUGGa-------------GA-CAC-UGCUAC-GGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 166040 0.66 0.966458
Target:  5'- -aUGCggACCagCUGUGACGccUGCguGGCg -3'
miRNA:   3'- gcACG--UGGa-GACACUGCu-ACGguCCG- -5'
15776 5' -55.6 NC_004065.1 + 127629 0.66 0.966458
Target:  5'- aCGUGCACCgcucgcgCUGccgcuGCGgcGCCgaGGGCg -3'
miRNA:   3'- -GCACGUGGa------GACac---UGCuaCGG--UCCG- -5'
15776 5' -55.6 NC_004065.1 + 41485 0.66 0.966458
Target:  5'- gCGUGCGCCggggCgucggGACGGggagcGCgCGGGCg -3'
miRNA:   3'- -GCACGUGGa---Gaca--CUGCUa----CG-GUCCG- -5'
15776 5' -55.6 NC_004065.1 + 203126 0.66 0.966458
Target:  5'- gCGUGCggucgagcgGCCUCUG-GACcg-GCC-GGCg -3'
miRNA:   3'- -GCACG---------UGGAGACaCUGcuaCGGuCCG- -5'
15776 5' -55.6 NC_004065.1 + 107430 0.66 0.966458
Target:  5'- uCGUGCugCcCUG-GAUcGUGCCcauGGCg -3'
miRNA:   3'- -GCACGugGaGACaCUGcUACGGu--CCG- -5'
15776 5' -55.6 NC_004065.1 + 119986 0.66 0.959162
Target:  5'- aGUGCugCUcCUGgaggagguugggGACGAcGCCgcugAGGCg -3'
miRNA:   3'- gCACGugGA-GACa-----------CUGCUaCGG----UCCG- -5'
15776 5' -55.6 NC_004065.1 + 78895 0.66 0.956258
Target:  5'- gCGUGCACCacCUGcaaggagacGACGAgacUGCCGacGGCg -3'
miRNA:   3'- -GCACGUGGa-GACa--------CUGCU---ACGGU--CCG- -5'
15776 5' -55.6 NC_004065.1 + 106421 0.66 0.956258
Target:  5'- gGUGUugCUCac-GGgGAUcGCCAGGCc -3'
miRNA:   3'- gCACGugGAGacaCUgCUA-CGGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 117315 0.66 0.953989
Target:  5'- uCGUGCACCaUCcGUGAaCGAacguggaccccggcuUGUCGGGg -3'
miRNA:   3'- -GCACGUGG-AGaCACU-GCU---------------ACGGUCCg -5'
15776 5' -55.6 NC_004065.1 + 80403 0.66 0.952434
Target:  5'- aCG-GCGCCg--GUGACGGUGgacgacaaCCGGGUc -3'
miRNA:   3'- -GCaCGUGGagaCACUGCUAC--------GGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 78035 0.67 0.944128
Target:  5'- gCGUGCGCCgggUCccUGAUGAggccgGCgGGGCg -3'
miRNA:   3'- -GCACGUGG---AGacACUGCUa----CGgUCCG- -5'
15776 5' -55.6 NC_004065.1 + 105000 0.67 0.944128
Target:  5'- aCGgGCGgCUgUGUGACGA-GCCGcugcuGGCg -3'
miRNA:   3'- -GCaCGUgGAgACACUGCUaCGGU-----CCG- -5'
15776 5' -55.6 NC_004065.1 + 166537 0.67 0.944128
Target:  5'- --cGCACCUggCUGcgcGACGgcGCCuGGCg -3'
miRNA:   3'- gcaCGUGGA--GACa--CUGCuaCGGuCCG- -5'
15776 5' -55.6 NC_004065.1 + 57742 0.67 0.944128
Target:  5'- cCGUGUACUuugUCUGUaACGGcacgagcGCCAGGUg -3'
miRNA:   3'- -GCACGUGG---AGACAcUGCUa------CGGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 77761 0.67 0.939641
Target:  5'- gGUGUGCCUgCUGUG-CGA-GCUgauGGCg -3'
miRNA:   3'- gCACGUGGA-GACACuGCUaCGGu--CCG- -5'
15776 5' -55.6 NC_004065.1 + 138632 0.67 0.939641
Target:  5'- aCGUaGaCGuCCUCUGcGACGA-GCUAGGUa -3'
miRNA:   3'- -GCA-C-GU-GGAGACaCUGCUaCGGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 31630 0.67 0.939641
Target:  5'- uCGUGCGgC----UGACGAcGCCGGGCu -3'
miRNA:   3'- -GCACGUgGagacACUGCUaCGGUCCG- -5'
15776 5' -55.6 NC_004065.1 + 19436 0.67 0.934928
Target:  5'- cCGgagGCACCgcgCUGcUGGCGAUgaGCguGGUg -3'
miRNA:   3'- -GCa--CGUGGa--GAC-ACUGCUA--CGguCCG- -5'
15776 5' -55.6 NC_004065.1 + 22798 0.67 0.924821
Target:  5'- cCGUGCGgCUCUGUGGgGGUGgUuGGa -3'
miRNA:   3'- -GCACGUgGAGACACUgCUACgGuCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.