Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 166818 | 0.66 | 0.995375 |
Target: 5'- cCGUCAUCGUGCaGCgGUUGGa---- -3' miRNA: 3'- aGCAGUAGCGCGgCGaCAACUaucug -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 78545 | 0.66 | 0.993546 |
Target: 5'- cCGUCcgCGUGCCGCUGcUccucucccucuccgGAgcGACa -3' miRNA: 3'- aGCAGuaGCGCGGCGACaA--------------CUauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 20403 | 0.66 | 0.995443 |
Target: 5'- cCGUCGgucuaaagcagacaGUGCCGCUGUUGAcGGuguACg -3' miRNA: 3'- aGCAGUag------------CGCGGCGACAACUaUC---UG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 162896 | 0.66 | 0.99464 |
Target: 5'- gCGUCcaggcgCGCGCCGCUGUccagcacGGCg -3' miRNA: 3'- aGCAGua----GCGCGGCGACAacuau--CUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 88047 | 0.66 | 0.99464 |
Target: 5'- gUCGUCAUCGcCGUCGCcuccgGAgggaGGACc -3' miRNA: 3'- -AGCAGUAGC-GCGGCGacaa-CUa---UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 22526 | 0.66 | 0.993813 |
Target: 5'- cCGcUAUCGCGCCGCgaguc-UGGACg -3' miRNA: 3'- aGCaGUAGCGCGGCGacaacuAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 198140 | 0.66 | 0.992887 |
Target: 5'- -gGUCAUCGcCGCCGCcaugGGUGG-Cg -3' miRNA: 3'- agCAGUAGC-GCGGCGacaaCUAUCuG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 87273 | 0.66 | 0.991743 |
Target: 5'- gUCGUCGUCGCGggagagaCCGCUacagaaGUcGAgcgAGGCg -3' miRNA: 3'- -AGCAGUAGCGC-------GGCGA------CAaCUa--UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 19436 | 0.66 | 0.993813 |
Target: 5'- cCGgaggCAcCGCGCUGCUGgcGAUGaGCg -3' miRNA: 3'- aGCa---GUaGCGCGGCGACaaCUAUcUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 189798 | 0.66 | 0.995375 |
Target: 5'- gUCGUCGUCGUccaccCCGUUGUucUGuaccaaAUAGACg -3' miRNA: 3'- -AGCAGUAGCGc----GGCGACA--AC------UAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 117067 | 0.66 | 0.995375 |
Target: 5'- aCGUUcggcCGCGgCGCUGUcGGUGGAg -3' miRNA: 3'- aGCAGua--GCGCgGCGACAaCUAUCUg -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 96988 | 0.67 | 0.990704 |
Target: 5'- cCGUcCGUCGCGCUGCUGc-----GACg -3' miRNA: 3'- aGCA-GUAGCGCGGCGACaacuauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 128155 | 0.67 | 0.98943 |
Target: 5'- gCGUUAcgcUCGCcgggccgccaGCCGCUGUUuccgcGAUGGAUa -3' miRNA: 3'- aGCAGU---AGCG----------CGGCGACAA-----CUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 146857 | 0.67 | 0.98648 |
Target: 5'- aCGUCG-CGCGCCGUgucgaccgcaUGaUGAUcGACg -3' miRNA: 3'- aGCAGUaGCGCGGCG----------ACaACUAuCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 135580 | 0.67 | 0.984962 |
Target: 5'- cCGUCAccuccuucgaacacaCGCGCCGCUGgg---AGACg -3' miRNA: 3'- aGCAGUa--------------GCGCGGCGACaacuaUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 197545 | 0.67 | 0.990704 |
Target: 5'- aUCGUCAagggacacuggCGCGCCGaCgaccUGGUGGGCa -3' miRNA: 3'- -AGCAGUa----------GCGCGGC-Gaca-ACUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 109360 | 0.67 | 0.98943 |
Target: 5'- uUCGUC-UCGCGCgacaCGCUGcgcgUGAagaAGACa -3' miRNA: 3'- -AGCAGuAGCGCG----GCGACa---ACUa--UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 202916 | 0.67 | 0.984785 |
Target: 5'- gUCGUCAUCGuCGUCGUUGgcguucggGGUccuggggagaGGACg -3' miRNA: 3'- -AGCAGUAGC-GCGGCGACaa------CUA----------UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 13582 | 0.67 | 0.988025 |
Target: 5'- -aGUCGUCGUGUgggaCGUUGgaGAUAGAg -3' miRNA: 3'- agCAGUAGCGCG----GCGACaaCUAUCUg -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 185511 | 0.67 | 0.990704 |
Target: 5'- cCGguaaCAUCGCGCCGCcGgacGA-AGACg -3' miRNA: 3'- aGCa---GUAGCGCGGCGaCaa-CUaUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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