miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15777 3' -52.3 NC_004065.1 + 138373 1.1 0.008911
Target:  5'- gUCGUCAUCGCGCCGCUGUUGAUAGACc -3'
miRNA:   3'- -AGCAGUAGCGCGGCGACAACUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 97192 0.77 0.647107
Target:  5'- cUCGUCGUCGCGCUGCgccu-GUAGGCc -3'
miRNA:   3'- -AGCAGUAGCGCGGCGacaacUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 13093 0.76 0.677691
Target:  5'- aUUGUCAUCGCGUcucuccugagCGCUGUUGAaucuacagAGACa -3'
miRNA:   3'- -AGCAGUAGCGCG----------GCGACAACUa-------UCUG- -5'
15777 3' -52.3 NC_004065.1 + 78611 0.74 0.812012
Target:  5'- aCGUCGUCGCGCCGCcugagGUgaacgcGGUcGGCg -3'
miRNA:   3'- aGCAGUAGCGCGGCGa----CAa-----CUAuCUG- -5'
15777 3' -52.3 NC_004065.1 + 165493 0.72 0.88315
Target:  5'- gUCGcCGUCGCGCCGCagcugcugcgUGgUGAgcgagAGACg -3'
miRNA:   3'- -AGCaGUAGCGCGGCG----------ACaACUa----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 105916 0.72 0.868754
Target:  5'- gUGUCgAUCGCGgCGCUGagccgGAUGGGCc -3'
miRNA:   3'- aGCAG-UAGCGCgGCGACaa---CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 62030 0.72 0.88315
Target:  5'- gUCGcCAUCGCuGCUGCUGcUGGUGGuGCc -3'
miRNA:   3'- -AGCaGUAGCG-CGGCGACaACUAUC-UG- -5'
15777 3' -52.3 NC_004065.1 + 61836 0.71 0.908024
Target:  5'- gUCGUCAaacaaggcgUCGCGCCGCUGUcgcgccccgcgcGAaGGGCc -3'
miRNA:   3'- -AGCAGU---------AGCGCGGCGACAa-----------CUaUCUG- -5'
15777 3' -52.3 NC_004065.1 + 35399 0.71 0.920882
Target:  5'- cCGUCAUCgGCGCCGUgGgaGAguaccgGGACg -3'
miRNA:   3'- aGCAGUAG-CGCGGCGaCaaCUa-----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 35957 0.7 0.945816
Target:  5'- gUCGUCGgacUCGCGCCGCUGcuccugccucacUUacUAGAUg -3'
miRNA:   3'- -AGCAGU---AGCGCGGCGAC------------AAcuAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 206562 0.7 0.944933
Target:  5'- gUCGUCAUCGUcgcgaGCCGCgcgcauacgGAUAGAg -3'
miRNA:   3'- -AGCAGUAGCG-----CGGCGacaa-----CUAUCUg -5'
15777 3' -52.3 NC_004065.1 + 57762 0.7 0.941305
Target:  5'- aUCGUCGUCGcCGCCGCcGUcgcucucGGUGGuCa -3'
miRNA:   3'- -AGCAGUAGC-GCGGCGaCAa------CUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 229623 0.7 0.936557
Target:  5'- aUGUCucUCGCGCCGCg--UGGUAG-Ca -3'
miRNA:   3'- aGCAGu-AGCGCGGCGacaACUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 89672 0.7 0.931571
Target:  5'- gCGUCGUcccgaaCGCGCCGCa---GAUGGACu -3'
miRNA:   3'- aGCAGUA------GCGCGGCGacaaCUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 108647 0.69 0.970473
Target:  5'- aUCGUguucugCGUGCCGCUGgcgcccgugcgGAUGGACc -3'
miRNA:   3'- -AGCAgua---GCGCGGCGACaa---------CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 1178 0.69 0.95414
Target:  5'- gUGUCGUCgGCGCCGCUGccggGGUAc-- -3'
miRNA:   3'- aGCAGUAG-CGCGGCGACaa--CUAUcug -5'
15777 3' -52.3 NC_004065.1 + 96813 0.69 0.95414
Target:  5'- -gGUC-UCGgGCUGCUGUUGA--GACu -3'
miRNA:   3'- agCAGuAGCgCGGCGACAACUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 35001 0.68 0.982934
Target:  5'- aCGUCGUCGC-CCGUcGUUGGc-GGCg -3'
miRNA:   3'- aGCAGUAGCGcGGCGaCAACUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 196730 0.68 0.980918
Target:  5'- gCGaCGUCGCGcCCGCUGUUcuccuGGCa -3'
miRNA:   3'- aGCaGUAGCGC-GGCGACAAcuau-CUG- -5'
15777 3' -52.3 NC_004065.1 + 18706 0.68 0.976359
Target:  5'- gUCGUCgAagGUGCCGCUGUcGAUcacAGAg -3'
miRNA:   3'- -AGCAG-UagCGCGGCGACAaCUA---UCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.