Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 202916 | 0.67 | 0.984785 |
Target: 5'- gUCGUCAUCGuCGUCGUUGgcguucggGGUccuggggagaGGACg -3' miRNA: 3'- -AGCAGUAGC-GCGGCGACaa------CUA----------UCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 35001 | 0.68 | 0.982934 |
Target: 5'- aCGUCGUCGC-CCGUcGUUGGc-GGCg -3' miRNA: 3'- aGCAGUAGCGcGGCGaCAACUauCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 196730 | 0.68 | 0.980918 |
Target: 5'- gCGaCGUCGCGcCCGCUGUUcuccuGGCa -3' miRNA: 3'- aGCaGUAGCGC-GGCGACAAcuau-CUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 18706 | 0.68 | 0.976359 |
Target: 5'- gUCGUCgAagGUGCCGCUGUcGAUcacAGAg -3' miRNA: 3'- -AGCAG-UagCGCGGCGACAaCUA---UCUg -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 81393 | 0.68 | 0.976359 |
Target: 5'- aUCGa-GUCGCuGCCGCUGUccaGAcAGACg -3' miRNA: 3'- -AGCagUAGCG-CGGCGACAa--CUaUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 28826 | 0.68 | 0.976359 |
Target: 5'- aCGUCGcCGCGCCGCcc--GAgccgGGACg -3' miRNA: 3'- aGCAGUaGCGCGGCGacaaCUa---UCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 90600 | 0.68 | 0.976111 |
Target: 5'- aUGUCAUCGUacaugcccgugagGCCGUUGaagaagcgGAUGGACu -3' miRNA: 3'- aGCAGUAGCG-------------CGGCGACaa------CUAUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 17708 | 0.68 | 0.973801 |
Target: 5'- gUCGUCGUCGCuuUGUUGUUGcgccucAGGCg -3' miRNA: 3'- -AGCAGUAGCGcgGCGACAACua----UCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 101460 | 0.68 | 0.973801 |
Target: 5'- cCGaCGUCGCuGCCGCUGcgGGcgcAGACa -3' miRNA: 3'- aGCaGUAGCG-CGGCGACaaCUa--UCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 108647 | 0.69 | 0.970473 |
Target: 5'- aUCGUguucugCGUGCCGCUGgcgcccgugcgGAUGGACc -3' miRNA: 3'- -AGCAgua---GCGCGGCGACaa---------CUAUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 96813 | 0.69 | 0.95414 |
Target: 5'- -gGUC-UCGgGCUGCUGUUGA--GACu -3' miRNA: 3'- agCAGuAGCgCGGCGACAACUauCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 1178 | 0.69 | 0.95414 |
Target: 5'- gUGUCGUCgGCGCCGCUGccggGGUAc-- -3' miRNA: 3'- aGCAGUAG-CGCGGCGACaa--CUAUcug -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 35957 | 0.7 | 0.945816 |
Target: 5'- gUCGUCGgacUCGCGCCGCUGcuccugccucacUUacUAGAUg -3' miRNA: 3'- -AGCAGU---AGCGCGGCGAC------------AAcuAUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 206562 | 0.7 | 0.944933 |
Target: 5'- gUCGUCAUCGUcgcgaGCCGCgcgcauacgGAUAGAg -3' miRNA: 3'- -AGCAGUAGCG-----CGGCGacaa-----CUAUCUg -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 57762 | 0.7 | 0.941305 |
Target: 5'- aUCGUCGUCGcCGCCGCcGUcgcucucGGUGGuCa -3' miRNA: 3'- -AGCAGUAGC-GCGGCGaCAa------CUAUCuG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 229623 | 0.7 | 0.936557 |
Target: 5'- aUGUCucUCGCGCCGCg--UGGUAG-Ca -3' miRNA: 3'- aGCAGu-AGCGCGGCGacaACUAUCuG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 89672 | 0.7 | 0.931571 |
Target: 5'- gCGUCGUcccgaaCGCGCCGCa---GAUGGACu -3' miRNA: 3'- aGCAGUA------GCGCGGCGacaaCUAUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 35399 | 0.71 | 0.920882 |
Target: 5'- cCGUCAUCgGCGCCGUgGgaGAguaccgGGACg -3' miRNA: 3'- aGCAGUAG-CGCGGCGaCaaCUa-----UCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 61836 | 0.71 | 0.908024 |
Target: 5'- gUCGUCAaacaaggcgUCGCGCCGCUGUcgcgccccgcgcGAaGGGCc -3' miRNA: 3'- -AGCAGU---------AGCGCGGCGACAa-----------CUaUCUG- -5' |
|||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 165493 | 0.72 | 0.88315 |
Target: 5'- gUCGcCGUCGCGCCGCagcugcugcgUGgUGAgcgagAGACg -3' miRNA: 3'- -AGCaGUAGCGCGGCG----------ACaACUa----UCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home