miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15777 3' -52.3 NC_004065.1 + 229623 0.7 0.936557
Target:  5'- aUGUCucUCGCGCCGCg--UGGUAG-Ca -3'
miRNA:   3'- aGCAGu-AGCGCGGCGacaACUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 206562 0.7 0.944933
Target:  5'- gUCGUCAUCGUcgcgaGCCGCgcgcauacgGAUAGAg -3'
miRNA:   3'- -AGCAGUAGCG-----CGGCGacaa-----CUAUCUg -5'
15777 3' -52.3 NC_004065.1 + 202916 0.67 0.984785
Target:  5'- gUCGUCAUCGuCGUCGUUGgcguucggGGUccuggggagaGGACg -3'
miRNA:   3'- -AGCAGUAGC-GCGGCGACaa------CUA----------UCUG- -5'
15777 3' -52.3 NC_004065.1 + 198140 0.66 0.992887
Target:  5'- -gGUCAUCGcCGCCGCcaugGGUGG-Cg -3'
miRNA:   3'- agCAGUAGC-GCGGCGacaaCUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 197545 0.67 0.990704
Target:  5'- aUCGUCAagggacacuggCGCGCCGaCgaccUGGUGGGCa -3'
miRNA:   3'- -AGCAGUa----------GCGCGGC-Gaca-ACUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 196730 0.68 0.980918
Target:  5'- gCGaCGUCGCGcCCGCUGUUcuccuGGCa -3'
miRNA:   3'- aGCaGUAGCGC-GGCGACAAcuau-CUG- -5'
15777 3' -52.3 NC_004065.1 + 189798 0.66 0.995375
Target:  5'- gUCGUCGUCGUccaccCCGUUGUucUGuaccaaAUAGACg -3'
miRNA:   3'- -AGCAGUAGCGc----GGCGACA--AC------UAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 185511 0.67 0.990704
Target:  5'- cCGguaaCAUCGCGCCGCcGgacGA-AGACg -3'
miRNA:   3'- aGCa---GUAGCGCGGCGaCaa-CUaUCUG- -5'
15777 3' -52.3 NC_004065.1 + 166818 0.66 0.995375
Target:  5'- cCGUCAUCGUGCaGCgGUUGGa---- -3'
miRNA:   3'- aGCAGUAGCGCGgCGaCAACUaucug -5'
15777 3' -52.3 NC_004065.1 + 165493 0.72 0.88315
Target:  5'- gUCGcCGUCGCGCCGCagcugcugcgUGgUGAgcgagAGACg -3'
miRNA:   3'- -AGCaGUAGCGCGGCG----------ACaACUa----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 162896 0.66 0.99464
Target:  5'- gCGUCcaggcgCGCGCCGCUGUccagcacGGCg -3'
miRNA:   3'- aGCAGua----GCGCGGCGACAacuau--CUG- -5'
15777 3' -52.3 NC_004065.1 + 146857 0.67 0.98648
Target:  5'- aCGUCG-CGCGCCGUgucgaccgcaUGaUGAUcGACg -3'
miRNA:   3'- aGCAGUaGCGCGGCG----------ACaACUAuCUG- -5'
15777 3' -52.3 NC_004065.1 + 138373 1.1 0.008911
Target:  5'- gUCGUCAUCGCGCCGCUGUUGAUAGACc -3'
miRNA:   3'- -AGCAGUAGCGCGGCGACAACUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 135580 0.67 0.984962
Target:  5'- cCGUCAccuccuucgaacacaCGCGCCGCUGgg---AGACg -3'
miRNA:   3'- aGCAGUa--------------GCGCGGCGACaacuaUCUG- -5'
15777 3' -52.3 NC_004065.1 + 128155 0.67 0.98943
Target:  5'- gCGUUAcgcUCGCcgggccgccaGCCGCUGUUuccgcGAUGGAUa -3'
miRNA:   3'- aGCAGU---AGCG----------CGGCGACAA-----CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 117067 0.66 0.995375
Target:  5'- aCGUUcggcCGCGgCGCUGUcGGUGGAg -3'
miRNA:   3'- aGCAGua--GCGCgGCGACAaCUAUCUg -5'
15777 3' -52.3 NC_004065.1 + 109360 0.67 0.98943
Target:  5'- uUCGUC-UCGCGCgacaCGCUGcgcgUGAagaAGACa -3'
miRNA:   3'- -AGCAGuAGCGCG----GCGACa---ACUa--UCUG- -5'
15777 3' -52.3 NC_004065.1 + 108647 0.69 0.970473
Target:  5'- aUCGUguucugCGUGCCGCUGgcgcccgugcgGAUGGACc -3'
miRNA:   3'- -AGCAgua---GCGCGGCGACaa---------CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 105916 0.72 0.868754
Target:  5'- gUGUCgAUCGCGgCGCUGagccgGAUGGGCc -3'
miRNA:   3'- aGCAG-UAGCGCgGCGACaa---CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 101460 0.68 0.973801
Target:  5'- cCGaCGUCGCuGCCGCUGcgGGcgcAGACa -3'
miRNA:   3'- aGCaGUAGCG-CGGCGACaaCUa--UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.