Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 97192 | 0.77 | 0.647107 |
Target: 5'- cUCGUCGUCGCGCUGCgccu-GUAGGCc -3' miRNA: 3'- -AGCAGUAGCGCGGCGacaacUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 96988 | 0.67 | 0.990704 |
Target: 5'- cCGUcCGUCGCGCUGCUGc-----GACg -3' miRNA: 3'- aGCA-GUAGCGCGGCGACaacuauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 96813 | 0.69 | 0.95414 |
Target: 5'- -gGUC-UCGgGCUGCUGUUGA--GACu -3' miRNA: 3'- agCAGuAGCgCGGCGACAACUauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 90600 | 0.68 | 0.976111 |
Target: 5'- aUGUCAUCGUacaugcccgugagGCCGUUGaagaagcgGAUGGACu -3' miRNA: 3'- aGCAGUAGCG-------------CGGCGACaa------CUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 89672 | 0.7 | 0.931571 |
Target: 5'- gCGUCGUcccgaaCGCGCCGCa---GAUGGACu -3' miRNA: 3'- aGCAGUA------GCGCGGCGacaaCUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 88047 | 0.66 | 0.99464 |
Target: 5'- gUCGUCAUCGcCGUCGCcuccgGAgggaGGACc -3' miRNA: 3'- -AGCAGUAGC-GCGGCGacaa-CUa---UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 87273 | 0.66 | 0.991743 |
Target: 5'- gUCGUCGUCGCGggagagaCCGCUacagaaGUcGAgcgAGGCg -3' miRNA: 3'- -AGCAGUAGCGC-------GGCGA------CAaCUa--UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 83991 | 0.67 | 0.98943 |
Target: 5'- -gGUCGUgGCGCCuucgGCga-UGAUGGACu -3' miRNA: 3'- agCAGUAgCGCGG----CGacaACUAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 81393 | 0.68 | 0.976359 |
Target: 5'- aUCGa-GUCGCuGCCGCUGUccaGAcAGACg -3' miRNA: 3'- -AGCagUAGCG-CGGCGACAa--CUaUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 78611 | 0.74 | 0.812012 |
Target: 5'- aCGUCGUCGCGCCGCcugagGUgaacgcGGUcGGCg -3' miRNA: 3'- aGCAGUAGCGCGGCGa----CAa-----CUAuCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 78545 | 0.66 | 0.993546 |
Target: 5'- cCGUCcgCGUGCCGCUGcUccucucccucuccgGAgcGACa -3' miRNA: 3'- aGCAGuaGCGCGGCGACaA--------------CUauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 62030 | 0.72 | 0.88315 |
Target: 5'- gUCGcCAUCGCuGCUGCUGcUGGUGGuGCc -3' miRNA: 3'- -AGCaGUAGCG-CGGCGACaACUAUC-UG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 61836 | 0.71 | 0.908024 |
Target: 5'- gUCGUCAaacaaggcgUCGCGCCGCUGUcgcgccccgcgcGAaGGGCc -3' miRNA: 3'- -AGCAGU---------AGCGCGGCGACAa-----------CUaUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 57762 | 0.7 | 0.941305 |
Target: 5'- aUCGUCGUCGcCGCCGCcGUcgcucucGGUGGuCa -3' miRNA: 3'- -AGCAGUAGC-GCGGCGaCAa------CUAUCuG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 35957 | 0.7 | 0.945816 |
Target: 5'- gUCGUCGgacUCGCGCCGCUGcuccugccucacUUacUAGAUg -3' miRNA: 3'- -AGCAGU---AGCGCGGCGAC------------AAcuAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 35399 | 0.71 | 0.920882 |
Target: 5'- cCGUCAUCgGCGCCGUgGgaGAguaccgGGACg -3' miRNA: 3'- aGCAGUAG-CGCGGCGaCaaCUa-----UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 35001 | 0.68 | 0.982934 |
Target: 5'- aCGUCGUCGC-CCGUcGUUGGc-GGCg -3' miRNA: 3'- aGCAGUAGCGcGGCGaCAACUauCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 28826 | 0.68 | 0.976359 |
Target: 5'- aCGUCGcCGCGCCGCcc--GAgccgGGACg -3' miRNA: 3'- aGCAGUaGCGCGGCGacaaCUa---UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 22526 | 0.66 | 0.993813 |
Target: 5'- cCGcUAUCGCGCCGCgaguc-UGGACg -3' miRNA: 3'- aGCaGUAGCGCGGCGacaacuAUCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 20403 | 0.66 | 0.995443 |
Target: 5'- cCGUCGgucuaaagcagacaGUGCCGCUGUUGAcGGuguACg -3' miRNA: 3'- aGCAGUag------------CGCGGCGACAACUaUC---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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