Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15777 | 3' | -52.3 | NC_004065.1 | + | 19436 | 0.66 | 0.993813 |
Target: 5'- cCGgaggCAcCGCGCUGCUGgcGAUGaGCg -3' miRNA: 3'- aGCa---GUaGCGCGGCGACaaCUAUcUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 18706 | 0.68 | 0.976359 |
Target: 5'- gUCGUCgAagGUGCCGCUGUcGAUcacAGAg -3' miRNA: 3'- -AGCAG-UagCGCGGCGACAaCUA---UCUg -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 17708 | 0.68 | 0.973801 |
Target: 5'- gUCGUCGUCGCuuUGUUGUUGcgccucAGGCg -3' miRNA: 3'- -AGCAGUAGCGcgGCGACAACua----UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 13582 | 0.67 | 0.988025 |
Target: 5'- -aGUCGUCGUGUgggaCGUUGgaGAUAGAg -3' miRNA: 3'- agCAGUAGCGCG----GCGACaaCUAUCUg -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 13093 | 0.76 | 0.677691 |
Target: 5'- aUUGUCAUCGCGUcucuccugagCGCUGUUGAaucuacagAGACa -3' miRNA: 3'- -AGCAGUAGCGCG----------GCGACAACUa-------UCUG- -5' |
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15777 | 3' | -52.3 | NC_004065.1 | + | 1178 | 0.69 | 0.95414 |
Target: 5'- gUGUCGUCgGCGCCGCUGccggGGUAc-- -3' miRNA: 3'- aGCAGUAG-CGCGGCGACaa--CUAUcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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