miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15777 3' -52.3 NC_004065.1 + 35957 0.7 0.945816
Target:  5'- gUCGUCGgacUCGCGCCGCUGcuccugccucacUUacUAGAUg -3'
miRNA:   3'- -AGCAGU---AGCGCGGCGAC------------AAcuAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 96813 0.69 0.95414
Target:  5'- -gGUC-UCGgGCUGCUGUUGA--GACu -3'
miRNA:   3'- agCAGuAGCgCGGCGACAACUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 1178 0.69 0.95414
Target:  5'- gUGUCGUCgGCGCCGCUGccggGGUAc-- -3'
miRNA:   3'- aGCAGUAG-CGCGGCGACaa--CUAUcug -5'
15777 3' -52.3 NC_004065.1 + 202916 0.67 0.984785
Target:  5'- gUCGUCAUCGuCGUCGUUGgcguucggGGUccuggggagaGGACg -3'
miRNA:   3'- -AGCAGUAGC-GCGGCGACaa------CUA----------UCUG- -5'
15777 3' -52.3 NC_004065.1 + 13582 0.67 0.988025
Target:  5'- -aGUCGUCGUGUgggaCGUUGgaGAUAGAg -3'
miRNA:   3'- agCAGUAGCGCG----GCGACaaCUAUCUg -5'
15777 3' -52.3 NC_004065.1 + 83991 0.67 0.98943
Target:  5'- -gGUCGUgGCGCCuucgGCga-UGAUGGACu -3'
miRNA:   3'- agCAGUAgCGCGG----CGacaACUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 109360 0.67 0.98943
Target:  5'- uUCGUC-UCGCGCgacaCGCUGcgcgUGAagaAGACa -3'
miRNA:   3'- -AGCAGuAGCGCG----GCGACa---ACUa--UCUG- -5'
15777 3' -52.3 NC_004065.1 + 185511 0.67 0.990704
Target:  5'- cCGguaaCAUCGCGCCGCcGgacGA-AGACg -3'
miRNA:   3'- aGCa---GUAGCGCGGCGaCaa-CUaUCUG- -5'
15777 3' -52.3 NC_004065.1 + 197545 0.67 0.990704
Target:  5'- aUCGUCAagggacacuggCGCGCCGaCgaccUGGUGGGCa -3'
miRNA:   3'- -AGCAGUa----------GCGCGGC-Gaca-ACUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 87273 0.66 0.991743
Target:  5'- gUCGUCGUCGCGggagagaCCGCUacagaaGUcGAgcgAGGCg -3'
miRNA:   3'- -AGCAGUAGCGC-------GGCGA------CAaCUa--UCUG- -5'
15777 3' -52.3 NC_004065.1 + 81393 0.68 0.976359
Target:  5'- aUCGa-GUCGCuGCCGCUGUccaGAcAGACg -3'
miRNA:   3'- -AGCagUAGCG-CGGCGACAa--CUaUCUG- -5'
15777 3' -52.3 NC_004065.1 + 28826 0.68 0.976359
Target:  5'- aCGUCGcCGCGCCGCcc--GAgccgGGACg -3'
miRNA:   3'- aGCAGUaGCGCGGCGacaaCUa---UCUG- -5'
15777 3' -52.3 NC_004065.1 + 101460 0.68 0.973801
Target:  5'- cCGaCGUCGCuGCCGCUGcgGGcgcAGACa -3'
miRNA:   3'- aGCaGUAGCG-CGGCGACaaCUa--UCUG- -5'
15777 3' -52.3 NC_004065.1 + 108647 0.69 0.970473
Target:  5'- aUCGUguucugCGUGCCGCUGgcgcccgugcgGAUGGACc -3'
miRNA:   3'- -AGCAgua---GCGCGGCGACaa---------CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 229623 0.7 0.936557
Target:  5'- aUGUCucUCGCGCCGCg--UGGUAG-Ca -3'
miRNA:   3'- aGCAGu-AGCGCGGCGacaACUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 35399 0.71 0.920882
Target:  5'- cCGUCAUCgGCGCCGUgGgaGAguaccgGGACg -3'
miRNA:   3'- aGCAGUAG-CGCGGCGaCaaCUa-----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 165493 0.72 0.88315
Target:  5'- gUCGcCGUCGCGCCGCagcugcugcgUGgUGAgcgagAGACg -3'
miRNA:   3'- -AGCaGUAGCGCGGCG----------ACaACUa----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 105916 0.72 0.868754
Target:  5'- gUGUCgAUCGCGgCGCUGagccgGAUGGGCc -3'
miRNA:   3'- aGCAG-UAGCGCgGCGACaa---CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 78611 0.74 0.812012
Target:  5'- aCGUCGUCGCGCCGCcugagGUgaacgcGGUcGGCg -3'
miRNA:   3'- aGCAGUAGCGCGGCGa----CAa-----CUAuCUG- -5'
15777 3' -52.3 NC_004065.1 + 20403 0.66 0.995443
Target:  5'- cCGUCGgucuaaagcagacaGUGCCGCUGUUGAcGGuguACg -3'
miRNA:   3'- aGCAGUag------------CGCGGCGACAACUaUC---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.