Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15777 | 3' | -52.3 | NC_004065.1 | + | 229623 | 0.7 | 0.936557 |
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Target: 5'- aUGUCucUCGCGCCGCg--UGGUAG-Ca -3' miRNA: 3'- aGCAGu-AGCGCGGCGacaACUAUCuG- -5' |
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| 15777 | 3' | -52.3 | NC_004065.1 | + | 108647 | 0.69 | 0.970473 |
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Target: 5'- aUCGUguucugCGUGCCGCUGgcgcccgugcgGAUGGACc -3' miRNA: 3'- -AGCAgua---GCGCGGCGACaa---------CUAUCUG- -5' |
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| 15777 | 3' | -52.3 | NC_004065.1 | + | 101460 | 0.68 | 0.973801 |
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Target: 5'- cCGaCGUCGCuGCCGCUGcgGGcgcAGACa -3' miRNA: 3'- aGCaGUAGCG-CGGCGACaaCUa--UCUG- -5' |
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| 15777 | 3' | -52.3 | NC_004065.1 | + | 28826 | 0.68 | 0.976359 |
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Target: 5'- aCGUCGcCGCGCCGCcc--GAgccgGGACg -3' miRNA: 3'- aGCAGUaGCGCGGCGacaaCUa---UCUG- -5' |
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| 15777 | 3' | -52.3 | NC_004065.1 | + | 81393 | 0.68 | 0.976359 |
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Target: 5'- aUCGa-GUCGCuGCCGCUGUccaGAcAGACg -3' miRNA: 3'- -AGCagUAGCG-CGGCGACAa--CUaUCUG- -5' |
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| 15777 | 3' | -52.3 | NC_004065.1 | + | 138373 | 1.1 | 0.008911 |
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Target: 5'- gUCGUCAUCGCGCCGCUGUUGAUAGACc -3' miRNA: 3'- -AGCAGUAGCGCGGCGACAACUAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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