miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15777 3' -52.3 NC_004065.1 + 20403 0.66 0.995443
Target:  5'- cCGUCGgucuaaagcagacaGUGCCGCUGUUGAcGGuguACg -3'
miRNA:   3'- aGCAGUag------------CGCGGCGACAACUaUC---UG- -5'
15777 3' -52.3 NC_004065.1 + 162896 0.66 0.99464
Target:  5'- gCGUCcaggcgCGCGCCGCUGUccagcacGGCg -3'
miRNA:   3'- aGCAGua----GCGCGGCGACAacuau--CUG- -5'
15777 3' -52.3 NC_004065.1 + 88047 0.66 0.99464
Target:  5'- gUCGUCAUCGcCGUCGCcuccgGAgggaGGACc -3'
miRNA:   3'- -AGCAGUAGC-GCGGCGacaa-CUa---UCUG- -5'
15777 3' -52.3 NC_004065.1 + 89672 0.7 0.931571
Target:  5'- gCGUCGUcccgaaCGCGCCGCa---GAUGGACu -3'
miRNA:   3'- aGCAGUA------GCGCGGCGacaaCUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 57762 0.7 0.941305
Target:  5'- aUCGUCGUCGcCGCCGCcGUcgcucucGGUGGuCa -3'
miRNA:   3'- -AGCAGUAGC-GCGGCGaCAa------CUAUCuG- -5'
15777 3' -52.3 NC_004065.1 + 62030 0.72 0.88315
Target:  5'- gUCGcCAUCGCuGCUGCUGcUGGUGGuGCc -3'
miRNA:   3'- -AGCaGUAGCG-CGGCGACaACUAUC-UG- -5'
15777 3' -52.3 NC_004065.1 + 206562 0.7 0.944933
Target:  5'- gUCGUCAUCGUcgcgaGCCGCgcgcauacgGAUAGAg -3'
miRNA:   3'- -AGCAGUAGCG-----CGGCGacaa-----CUAUCUg -5'
15777 3' -52.3 NC_004065.1 + 96813 0.69 0.95414
Target:  5'- -gGUC-UCGgGCUGCUGUUGA--GACu -3'
miRNA:   3'- agCAGuAGCgCGGCGACAACUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 1178 0.69 0.95414
Target:  5'- gUGUCGUCgGCGCCGCUGccggGGUAc-- -3'
miRNA:   3'- aGCAGUAG-CGCGGCGACaa--CUAUcug -5'
15777 3' -52.3 NC_004065.1 + 17708 0.68 0.973801
Target:  5'- gUCGUCGUCGCuuUGUUGUUGcgccucAGGCg -3'
miRNA:   3'- -AGCAGUAGCGcgGCGACAACua----UCUG- -5'
15777 3' -52.3 NC_004065.1 + 90600 0.68 0.976111
Target:  5'- aUGUCAUCGUacaugcccgugagGCCGUUGaagaagcgGAUGGACu -3'
miRNA:   3'- aGCAGUAGCG-------------CGGCGACaa------CUAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 96988 0.67 0.990704
Target:  5'- cCGUcCGUCGCGCUGCUGc-----GACg -3'
miRNA:   3'- aGCA-GUAGCGCGGCGACaacuauCUG- -5'
15777 3' -52.3 NC_004065.1 + 78545 0.66 0.993546
Target:  5'- cCGUCcgCGUGCCGCUGcUccucucccucuccgGAgcGACa -3'
miRNA:   3'- aGCAGuaGCGCGGCGACaA--------------CUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 146857 0.67 0.98648
Target:  5'- aCGUCG-CGCGCCGUgucgaccgcaUGaUGAUcGACg -3'
miRNA:   3'- aGCAGUaGCGCGGCG----------ACaACUAuCUG- -5'
15777 3' -52.3 NC_004065.1 + 166818 0.66 0.995375
Target:  5'- cCGUCAUCGUGCaGCgGUUGGa---- -3'
miRNA:   3'- aGCAGUAGCGCGgCGaCAACUaucug -5'
15777 3' -52.3 NC_004065.1 + 189798 0.66 0.995375
Target:  5'- gUCGUCGUCGUccaccCCGUUGUucUGuaccaaAUAGACg -3'
miRNA:   3'- -AGCAGUAGCGc----GGCGACA--AC------UAUCUG- -5'
15777 3' -52.3 NC_004065.1 + 35001 0.68 0.982934
Target:  5'- aCGUCGUCGC-CCGUcGUUGGc-GGCg -3'
miRNA:   3'- aGCAGUAGCGcGGCGaCAACUauCUG- -5'
15777 3' -52.3 NC_004065.1 + 19436 0.66 0.993813
Target:  5'- cCGgaggCAcCGCGCUGCUGgcGAUGaGCg -3'
miRNA:   3'- aGCa---GUaGCGCGGCGACaaCUAUcUG- -5'
15777 3' -52.3 NC_004065.1 + 196730 0.68 0.980918
Target:  5'- gCGaCGUCGCGcCCGCUGUUcuccuGGCa -3'
miRNA:   3'- aGCaGUAGCGC-GGCGACAAcuau-CUG- -5'
15777 3' -52.3 NC_004065.1 + 18706 0.68 0.976359
Target:  5'- gUCGUCgAagGUGCCGCUGUcGAUcacAGAg -3'
miRNA:   3'- -AGCAG-UagCGCGGCGACAaCUA---UCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.