miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15778 3' -47.7 NC_004065.1 + 79550 0.66 0.999961
Target:  5'- aGGCGGUCGAugcGGCGCaGCg-------- -3'
miRNA:   3'- -CUGCCAGCU---CCGUGaCGauuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 75806 0.66 0.999961
Target:  5'- cGGCGG-CGAGGCACcugGCa-------- -3'
miRNA:   3'- -CUGCCaGCUCCGUGa--CGauuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 88727 0.66 0.999948
Target:  5'- uGACGGUCuuGGU-CUGCUGGAa---- -3'
miRNA:   3'- -CUGCCAGcuCCGuGACGAUUUaaaac -5'
15778 3' -47.7 NC_004065.1 + 188231 0.66 0.999948
Target:  5'- --gGGUCGGGGCcgaGCUGCgaUAGAUg--- -3'
miRNA:   3'- cugCCAGCUCCG---UGACG--AUUUAaaac -5'
15778 3' -47.7 NC_004065.1 + 86508 0.66 0.999948
Target:  5'- aGAC-GUCGAGGaCGCUGCUc------- -3'
miRNA:   3'- -CUGcCAGCUCC-GUGACGAuuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 60699 0.66 0.999931
Target:  5'- aGACGGU-GAuGGCGCUGCg-------- -3'
miRNA:   3'- -CUGCCAgCU-CCGUGACGauuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 40007 0.66 0.999931
Target:  5'- cGCGG-CGAGGCAUgGCUAu------ -3'
miRNA:   3'- cUGCCaGCUCCGUGaCGAUuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 193578 0.66 0.999931
Target:  5'- cGCGGaCGAGGUGCacGCUAGAUa--- -3'
miRNA:   3'- cUGCCaGCUCCGUGa-CGAUUUAaaac -5'
15778 3' -47.7 NC_004065.1 + 28998 0.66 0.999909
Target:  5'- cGGCGGUggCGAGGCGCcGCg-------- -3'
miRNA:   3'- -CUGCCA--GCUCCGUGaCGauuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 199825 0.67 0.999882
Target:  5'- aGCGGUCuGAGGCGCUacgacgGCUucggGGAUgUUGg -3'
miRNA:   3'- cUGCCAG-CUCCGUGA------CGA----UUUAaAAC- -5'
15778 3' -47.7 NC_004065.1 + 103753 0.67 0.999847
Target:  5'- -gUGGUgcAGGCGCUGCUGAAc---- -3'
miRNA:   3'- cuGCCAgcUCCGUGACGAUUUaaaac -5'
15778 3' -47.7 NC_004065.1 + 68808 0.67 0.999803
Target:  5'- uGCGGgcgcugcgCGAGGUcgaGCUGCUGAAg---- -3'
miRNA:   3'- cUGCCa-------GCUCCG---UGACGAUUUaaaac -5'
15778 3' -47.7 NC_004065.1 + 44540 0.67 0.999749
Target:  5'- gGACGGUgGcGGCGCUGCc-------- -3'
miRNA:   3'- -CUGCCAgCuCCGUGACGauuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 130004 0.67 0.999749
Target:  5'- cGGCGGaCGAGGCGaUGCUGu------ -3'
miRNA:   3'- -CUGCCaGCUCCGUgACGAUuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 201325 0.68 0.9996
Target:  5'- uGAUGGUggCGGGGUGCUGCUucugcgUGa -3'
miRNA:   3'- -CUGCCA--GCUCCGUGACGAuuuaaaAC- -5'
15778 3' -47.7 NC_004065.1 + 96903 0.68 0.999378
Target:  5'- cACGGUCGaAGGCgauuuGCUGCUGu------ -3'
miRNA:   3'- cUGCCAGC-UCCG-----UGACGAUuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 99211 0.68 0.999233
Target:  5'- aGACGGcCGAGGCGC-GCUc------- -3'
miRNA:   3'- -CUGCCaGCUCCGUGaCGAuuuaaaac -5'
15778 3' -47.7 NC_004065.1 + 130175 0.68 0.999058
Target:  5'- cGGCGGcgaUCGGGGCGCagacGCUGAAa---- -3'
miRNA:   3'- -CUGCC---AGCUCCGUGa---CGAUUUaaaac -5'
15778 3' -47.7 NC_004065.1 + 68891 0.7 0.997591
Target:  5'- aGACGGcCGAGGUGaaGCUGGAgg-UGa -3'
miRNA:   3'- -CUGCCaGCUCCGUgaCGAUUUaaaAC- -5'
15778 3' -47.7 NC_004065.1 + 77418 0.7 0.997139
Target:  5'- uGGCGGUgaccCG-GGCGCUGCUGAc----- -3'
miRNA:   3'- -CUGCCA----GCuCCGUGACGAUUuaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.