miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 3' -51.5 NC_001347.2 + 140872 0.66 0.998621
Target:  5'- gGGuUUCGuuuCGGAgGUGCGCCuCa -3'
miRNA:   3'- gCUuAAGCuauGCCUgCACGCGGuGc -5'
1578 3' -51.5 NC_001347.2 + 174773 0.66 0.998352
Target:  5'- ---cUUCGAgaccgGCGGcgACGUGgGUCGCGa -3'
miRNA:   3'- gcuuAAGCUa----UGCC--UGCACgCGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 183735 0.66 0.998352
Target:  5'- gCGAGUaugcaGAUACGGAUaaucuccUGgGCCACGg -3'
miRNA:   3'- -GCUUAag---CUAUGCCUGc------ACgCGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 187339 0.66 0.998039
Target:  5'- gGAGUUCGAggUGCGuugcguggccGugGcGCGUCGCGg -3'
miRNA:   3'- gCUUAAGCU--AUGC----------CugCaCGCGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 228353 0.66 0.998039
Target:  5'- uGggUggugCGAUGCGGugGauguggcgggGUGCgGCGg -3'
miRNA:   3'- gCuuAa---GCUAUGCCugCa---------CGCGgUGC- -5'
1578 3' -51.5 NC_001347.2 + 128251 0.66 0.998039
Target:  5'- cCGAGgugcUCGccuaucaccuGUACGGugGcgacgGCGCCACu -3'
miRNA:   3'- -GCUUa---AGC----------UAUGCCugCa----CGCGGUGc -5'
1578 3' -51.5 NC_001347.2 + 39604 0.66 0.998005
Target:  5'- gCGAGcacgCGGUuuagacacGCGGAcgccuucgucgccCGUGUGCCGCGg -3'
miRNA:   3'- -GCUUaa--GCUA--------UGCCU-------------GCACGCGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 198977 0.66 0.997677
Target:  5'- uGAGccgcggCGAUuCGGGCGUGCcgcgauGCCGCa -3'
miRNA:   3'- gCUUaa----GCUAuGCCUGCACG------CGGUGc -5'
1578 3' -51.5 NC_001347.2 + 5934 0.66 0.997262
Target:  5'- uCGcGUUCGGauuCGGAUGUGUacauaGCCAUGg -3'
miRNA:   3'- -GCuUAAGCUau-GCCUGCACG-----CGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 82707 0.66 0.997262
Target:  5'- aGggUguaCGGguggugGCGGugGUGCaGCgGCGg -3'
miRNA:   3'- gCuuAa--GCUa-----UGCCugCACG-CGgUGC- -5'
1578 3' -51.5 NC_001347.2 + 2150 0.67 0.995886
Target:  5'- gCGGuggUCGggGCGGACGcggcagcagcagcgGCGCCgACGg -3'
miRNA:   3'- -GCUua-AGCuaUGCCUGCa-------------CGCGG-UGC- -5'
1578 3' -51.5 NC_001347.2 + 199384 0.67 0.995632
Target:  5'- aCGAAUUUGAgaUACucGACGUGCuGCgGCGc -3'
miRNA:   3'- -GCUUAAGCU--AUGc-CUGCACG-CGgUGC- -5'
1578 3' -51.5 NC_001347.2 + 59457 0.67 0.995632
Target:  5'- uGAggUgGAUGCGGuGCgGUGuCGCCugGg -3'
miRNA:   3'- gCUuaAgCUAUGCC-UG-CAC-GCGGugC- -5'
1578 3' -51.5 NC_001347.2 + 151537 0.67 0.995632
Target:  5'- gCGAGUUCGucaaGGGCGUcacGCGUgACGu -3'
miRNA:   3'- -GCUUAAGCuaugCCUGCA---CGCGgUGC- -5'
1578 3' -51.5 NC_001347.2 + 5572 0.67 0.995632
Target:  5'- -----gCGGUGgGGGCGUGCcCCGCa -3'
miRNA:   3'- gcuuaaGCUAUgCCUGCACGcGGUGc -5'
1578 3' -51.5 NC_001347.2 + 162545 0.67 0.994158
Target:  5'- ----cUCGGUGCGGGUGacaGCGCCGCu -3'
miRNA:   3'- gcuuaAGCUAUGCCUGCa--CGCGGUGc -5'
1578 3' -51.5 NC_001347.2 + 153364 0.68 0.993283
Target:  5'- cCGAGcgUCGuucGCGcGGCGUGCGCaCGCc -3'
miRNA:   3'- -GCUUa-AGCua-UGC-CUGCACGCG-GUGc -5'
1578 3' -51.5 NC_001347.2 + 140298 0.68 0.99271
Target:  5'- uCGggUUCGucgACgcucacgaaucaccuGGugGgcUGCGCCGCGg -3'
miRNA:   3'- -GCuuAAGCua-UG---------------CCugC--ACGCGGUGC- -5'
1578 3' -51.5 NC_001347.2 + 151884 0.68 0.98869
Target:  5'- -----cCGGUGucCGGACG-GCGCCGCa -3'
miRNA:   3'- gcuuaaGCUAU--GCCUGCaCGCGGUGc -5'
1578 3' -51.5 NC_001347.2 + 133 0.69 0.987228
Target:  5'- aGggUgUGucGCGGGCGUGUGCCGgGu -3'
miRNA:   3'- gCuuAaGCuaUGCCUGCACGCGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.