miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 77602 0.65 0.976649
Target:  5'- -gUGUGGAGCGCcucguuGCGCcagagCGUGcaaacgGGCGUg -3'
miRNA:   3'- uaGCACCUUGCG------CGCGa----GCAU------UCGCG- -5'
1578 5' -55 NC_001347.2 + 156959 0.65 0.976649
Target:  5'- cAUCGUGGuggcgaGCGCGCUCc-GGGCcaucGCg -3'
miRNA:   3'- -UAGCACCuug---CGCGCGAGcaUUCG----CG- -5'
1578 5' -55 NC_001347.2 + 94357 0.65 0.975922
Target:  5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3'
miRNA:   3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5'
1578 5' -55 NC_001347.2 + 71206 0.66 0.974419
Target:  5'- uAUCGguu--CGCGCGCUCGUcuuuucuucgauguGCGCa -3'
miRNA:   3'- -UAGCaccuuGCGCGCGAGCAuu------------CGCG- -5'
1578 5' -55 NC_001347.2 + 82811 0.66 0.974163
Target:  5'- -aCGUGcucaAAC-CGCG-UCGUGAGCGCg -3'
miRNA:   3'- uaGCACc---UUGcGCGCgAGCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 93390 0.66 0.973904
Target:  5'- -cUGUGGcAACGCGcCGCcgucccgUCGUAguacAGCGUa -3'
miRNA:   3'- uaGCACC-UUGCGC-GCG-------AGCAU----UCGCG- -5'
1578 5' -55 NC_001347.2 + 147908 0.66 0.971489
Target:  5'- -cCGUGGGugGCGCgGUggccuccguggUCGaAGGCGUu -3'
miRNA:   3'- uaGCACCUugCGCG-CG-----------AGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 110472 0.66 0.971489
Target:  5'- -cCGcUGGAcCGCGUGCcCGUuAGCGg -3'
miRNA:   3'- uaGC-ACCUuGCGCGCGaGCAuUCGCg -5'
1578 5' -55 NC_001347.2 + 13927 0.66 0.970931
Target:  5'- cGUCGgagaguauaaacUGGGGCGgGCGCgggguggcgaagCGgGAGCGCu -3'
miRNA:   3'- -UAGC------------ACCUUGCgCGCGa-----------GCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 2458 0.66 0.969793
Target:  5'- -gCGcUGGGACGCGCugcaccugcacccgcGCgccgcgcUGUGGGCGCg -3'
miRNA:   3'- uaGC-ACCUUGCGCG---------------CGa------GCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 93462 0.66 0.968622
Target:  5'- cUCGacGGcGAUGCGCGCcCGaUAAGCGUc -3'
miRNA:   3'- uAGCa-CC-UUGCGCGCGaGC-AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 193475 0.66 0.968622
Target:  5'- uUCGUGGAcGCGUacgGCGC-CGUGuuCGCc -3'
miRNA:   3'- uAGCACCU-UGCG---CGCGaGCAUucGCG- -5'
1578 5' -55 NC_001347.2 + 1369 0.66 0.967724
Target:  5'- uGUCGccgcGGGACGCGUGgaUCGUAcugguggcuaccguGGUGCa -3'
miRNA:   3'- -UAGCa---CCUUGCGCGCg-AGCAU--------------UCGCG- -5'
1578 5' -55 NC_001347.2 + 199256 0.66 0.965557
Target:  5'- -gCGUGaGAu--CGCGCUCGccAGGCGCu -3'
miRNA:   3'- uaGCAC-CUugcGCGCGAGCa-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 140679 0.66 0.962286
Target:  5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3'
miRNA:   3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 15607 0.66 0.962286
Target:  5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3'
miRNA:   3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 183483 0.66 0.962286
Target:  5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3'
miRNA:   3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 110206 0.66 0.962286
Target:  5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3'
miRNA:   3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5'
1578 5' -55 NC_001347.2 + 151327 0.67 0.958805
Target:  5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3'
miRNA:   3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 199885 0.67 0.947062
Target:  5'- -cCGUGGcgcuGCGCGCccgcguGCUCGUGAaaaCGCu -3'
miRNA:   3'- uaGCACCu---UGCGCG------CGAGCAUUc--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.