Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1578 | 5' | -55 | NC_001347.2 | + | 193475 | 0.66 | 0.968622 |
Target: 5'- uUCGUGGAcGCGUacgGCGC-CGUGuuCGCc -3' miRNA: 3'- uAGCACCU-UGCG---CGCGaGCAUucGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 93462 | 0.66 | 0.968622 |
Target: 5'- cUCGacGGcGAUGCGCGCcCGaUAAGCGUc -3' miRNA: 3'- uAGCa-CC-UUGCGCGCGaGC-AUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 110206 | 0.66 | 0.962286 |
Target: 5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3' miRNA: 3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 183483 | 0.66 | 0.962286 |
Target: 5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3' miRNA: 3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 15607 | 0.66 | 0.962286 |
Target: 5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3' miRNA: 3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 140679 | 0.66 | 0.962286 |
Target: 5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3' miRNA: 3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 1369 | 0.66 | 0.967724 |
Target: 5'- uGUCGccgcGGGACGCGUGgaUCGUAcugguggcuaccguGGUGCa -3' miRNA: 3'- -UAGCa---CCUUGCGCGCg-AGCAU--------------UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 199256 | 0.66 | 0.965557 |
Target: 5'- -gCGUGaGAu--CGCGCUCGccAGGCGCu -3' miRNA: 3'- uaGCAC-CUugcGCGCGAGCa-UUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 94357 | 0.65 | 0.975922 |
Target: 5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3' miRNA: 3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 156959 | 0.65 | 0.976649 |
Target: 5'- cAUCGUGGuggcgaGCGCGCUCc-GGGCcaucGCg -3' miRNA: 3'- -UAGCACCuug---CGCGCGAGcaUUCG----CG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 77602 | 0.65 | 0.976649 |
Target: 5'- -gUGUGGAGCGCcucguuGCGCcagagCGUGcaaacgGGCGUg -3' miRNA: 3'- uaGCACCUUGCG------CGCGa----GCAU------UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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