miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 187474 1.11 0.004301
Target:  5'- gAUCGUGGAACGCGCGCUCGUAAGCGCg -3'
miRNA:   3'- -UAGCACCUUGCGCGCGAGCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 82290 0.76 0.557141
Target:  5'- -aCGUGGAAaagacuaaGCGCGUUCGacAGCGCu -3'
miRNA:   3'- uaGCACCUUg-------CGCGCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 185026 0.74 0.630961
Target:  5'- cUCGUGGGgguccaguucggccgGCGCGCGCUUGagcuGUGCg -3'
miRNA:   3'- uAGCACCU---------------UGCGCGCGAGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 25902 0.73 0.696892
Target:  5'- -cCGcUGGAACGCGCGCUUuu-GGCGg -3'
miRNA:   3'- uaGC-ACCUUGCGCGCGAGcauUCGCg -5'
1578 5' -55 NC_001347.2 + 48257 0.73 0.706742
Target:  5'- cUCGgccUGGGGCGCGgGCUCGUucGUGg -3'
miRNA:   3'- uAGC---ACCUUGCGCgCGAGCAuuCGCg -5'
1578 5' -55 NC_001347.2 + 208045 0.73 0.726252
Target:  5'- -aCGUcGGAGuCGCgGCGUUCGUuGGCGCc -3'
miRNA:   3'- uaGCA-CCUU-GCG-CGCGAGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 190508 0.72 0.745448
Target:  5'- -aCGaUGGAACGCGUGCgCGUccacAGCGUg -3'
miRNA:   3'- uaGC-ACCUUGCGCGCGaGCAu---UCGCG- -5'
1578 5' -55 NC_001347.2 + 171739 0.72 0.764262
Target:  5'- uUUGgGGcAACGCGCGCUUGgacGCGCu -3'
miRNA:   3'- uAGCaCC-UUGCGCGCGAGCauuCGCG- -5'
1578 5' -55 NC_001347.2 + 198381 0.72 0.782625
Target:  5'- --gGUGGGugGCGCGCggGUc-GCGCa -3'
miRNA:   3'- uagCACCUugCGCGCGagCAuuCGCG- -5'
1578 5' -55 NC_001347.2 + 52588 0.71 0.809172
Target:  5'- ---cUGGGACGCGUGCUCuc--GCGCg -3'
miRNA:   3'- uagcACCUUGCGCGCGAGcauuCGCG- -5'
1578 5' -55 NC_001347.2 + 172046 0.71 0.809172
Target:  5'- cAUCGcc-AGCGCGCGCUgGgAAGCGCu -3'
miRNA:   3'- -UAGCaccUUGCGCGCGAgCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 161115 0.71 0.809172
Target:  5'- uGUCGUGGuGACGCGCGaagCaUAGGCGa -3'
miRNA:   3'- -UAGCACC-UUGCGCGCga-GcAUUCGCg -5'
1578 5' -55 NC_001347.2 + 190682 0.71 0.826111
Target:  5'- --aGUGGAuaucguaagGCGCGUGCacCGUGAGCGa -3'
miRNA:   3'- uagCACCU---------UGCGCGCGa-GCAUUCGCg -5'
1578 5' -55 NC_001347.2 + 103611 0.7 0.834329
Target:  5'- uUCGUGGGcgagcACGUcaagGUGCUCG-AAGUGCg -3'
miRNA:   3'- uAGCACCU-----UGCG----CGCGAGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 139545 0.7 0.857895
Target:  5'- cUCGcUGGAugcGCGCaGCGCUuuUGUGgaGGCGCg -3'
miRNA:   3'- uAGC-ACCU---UGCG-CGCGA--GCAU--UCGCG- -5'
1578 5' -55 NC_001347.2 + 208114 0.7 0.865366
Target:  5'- -aCGgcGGAGCcGCGuCGCUCGccGGCGCu -3'
miRNA:   3'- uaGCa-CCUUG-CGC-GCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 118551 0.7 0.875483
Target:  5'- -cUGUGGGugGCGUGCcaccgcacggacugaUCGUcGGCGUc -3'
miRNA:   3'- uaGCACCUugCGCGCG---------------AGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 85521 0.69 0.879694
Target:  5'- -gCG-GGcGCGCGCGCUUG--AGCGUg -3'
miRNA:   3'- uaGCaCCuUGCGCGCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 158173 0.69 0.899587
Target:  5'- cAUC-UGG-ACGCGCGCUCGcuGGUGg -3'
miRNA:   3'- -UAGcACCuUGCGCGCGAGCauUCGCg -5'
1578 5' -55 NC_001347.2 + 165450 0.69 0.905776
Target:  5'- --gGUGGGACGCG-GUUUGgcguGCGCg -3'
miRNA:   3'- uagCACCUUGCGCgCGAGCauu-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.