miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 172146 0.68 0.917474
Target:  5'- cAUCuGUGGGGCGUGaCGC-CGUcAGUGUg -3'
miRNA:   3'- -UAG-CACCUUGCGC-GCGaGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 134992 0.68 0.922979
Target:  5'- -aCG-GGGACGUGCGUUCGUGccGGgGa -3'
miRNA:   3'- uaGCaCCUUGCGCGCGAGCAU--UCgCg -5'
1578 5' -55 NC_001347.2 + 126681 0.68 0.926696
Target:  5'- -gCGUGGuggcuuacgacgcuGACGCgGCGCcCG-AAGCGCa -3'
miRNA:   3'- uaGCACC--------------UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 96189 0.68 0.9333
Target:  5'- cUCG-GGcACGgGCGUggcggcCGUAGGCGCc -3'
miRNA:   3'- uAGCaCCuUGCgCGCGa-----GCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 142249 0.68 0.9333
Target:  5'- uUCGUGGAugGC-UGCg---AGGCGCu -3'
miRNA:   3'- uAGCACCUugCGcGCGagcaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 29934 0.68 0.9333
Target:  5'- cUCGUGGAGgcacCGCGacaGCUaccgAGGCGCu -3'
miRNA:   3'- uAGCACCUU----GCGCg--CGAgca-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 200598 0.67 0.942702
Target:  5'- cUCaUGGAGuuUGCGCGCgUCGggcuGCGCg -3'
miRNA:   3'- uAGcACCUU--GCGCGCG-AGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 99566 0.67 0.942702
Target:  5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3'
miRNA:   3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 173983 0.67 0.942702
Target:  5'- -gCGUgccugGGAACGCGCGCac---GGCGCg -3'
miRNA:   3'- uaGCA-----CCUUGCGCGCGagcauUCGCG- -5'
1578 5' -55 NC_001347.2 + 197680 0.67 0.942702
Target:  5'- -aCGUGGAGCGCGCuGCgc---AGgGCa -3'
miRNA:   3'- uaGCACCUUGCGCG-CGagcauUCgCG- -5'
1578 5' -55 NC_001347.2 + 199885 0.67 0.947062
Target:  5'- -cCGUGGcgcuGCGCGCccgcguGCUCGUGAaaaCGCu -3'
miRNA:   3'- uaGCACCu---UGCGCG------CGAGCAUUc--GCG- -5'
1578 5' -55 NC_001347.2 + 90977 0.67 0.947062
Target:  5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3'
miRNA:   3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 151327 0.67 0.958805
Target:  5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3'
miRNA:   3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 140679 0.66 0.962286
Target:  5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3'
miRNA:   3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 110206 0.66 0.962286
Target:  5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3'
miRNA:   3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5'
1578 5' -55 NC_001347.2 + 183483 0.66 0.962286
Target:  5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3'
miRNA:   3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 15607 0.66 0.962286
Target:  5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3'
miRNA:   3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 199256 0.66 0.965557
Target:  5'- -gCGUGaGAu--CGCGCUCGccAGGCGCu -3'
miRNA:   3'- uaGCAC-CUugcGCGCGAGCa-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 1369 0.66 0.967724
Target:  5'- uGUCGccgcGGGACGCGUGgaUCGUAcugguggcuaccguGGUGCa -3'
miRNA:   3'- -UAGCa---CCUUGCGCGCg-AGCAU--------------UCGCG- -5'
1578 5' -55 NC_001347.2 + 93462 0.66 0.968622
Target:  5'- cUCGacGGcGAUGCGCGCcCGaUAAGCGUc -3'
miRNA:   3'- uAGCa-CC-UUGCGCGCGaGC-AUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.