miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 90977 0.67 0.947062
Target:  5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3'
miRNA:   3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 197680 0.67 0.942702
Target:  5'- -aCGUGGAGCGCGCuGCgc---AGgGCa -3'
miRNA:   3'- uaGCACCUUGCGCG-CGagcauUCgCG- -5'
1578 5' -55 NC_001347.2 + 200598 0.67 0.942702
Target:  5'- cUCaUGGAGuuUGCGCGCgUCGggcuGCGCg -3'
miRNA:   3'- uAGcACCUU--GCGCGCG-AGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 99566 0.67 0.942702
Target:  5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3'
miRNA:   3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 173983 0.67 0.942702
Target:  5'- -gCGUgccugGGAACGCGCGCac---GGCGCg -3'
miRNA:   3'- uaGCA-----CCUUGCGCGCGagcauUCGCG- -5'
1578 5' -55 NC_001347.2 + 96189 0.68 0.9333
Target:  5'- cUCG-GGcACGgGCGUggcggcCGUAGGCGCc -3'
miRNA:   3'- uAGCaCCuUGCgCGCGa-----GCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 142249 0.68 0.9333
Target:  5'- uUCGUGGAugGC-UGCg---AGGCGCu -3'
miRNA:   3'- uAGCACCUugCGcGCGagcaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 29934 0.68 0.9333
Target:  5'- cUCGUGGAGgcacCGCGacaGCUaccgAGGCGCu -3'
miRNA:   3'- uAGCACCUU----GCGCg--CGAgca-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 126681 0.68 0.926696
Target:  5'- -gCGUGGuggcuuacgacgcuGACGCgGCGCcCG-AAGCGCa -3'
miRNA:   3'- uaGCACC--------------UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 134992 0.68 0.922979
Target:  5'- -aCG-GGGACGUGCGUUCGUGccGGgGa -3'
miRNA:   3'- uaGCaCCUUGCGCGCGAGCAU--UCgCg -5'
1578 5' -55 NC_001347.2 + 172146 0.68 0.917474
Target:  5'- cAUCuGUGGGGCGUGaCGC-CGUcAGUGUg -3'
miRNA:   3'- -UAG-CACCUUGCGC-GCGaGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 165450 0.69 0.905776
Target:  5'- --gGUGGGACGCG-GUUUGgcguGCGCg -3'
miRNA:   3'- uagCACCUUGCGCgCGAGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 158173 0.69 0.899587
Target:  5'- cAUC-UGG-ACGCGCGCUCGcuGGUGg -3'
miRNA:   3'- -UAGcACCuUGCGCGCGAGCauUCGCg -5'
1578 5' -55 NC_001347.2 + 85521 0.69 0.879694
Target:  5'- -gCG-GGcGCGCGCGCUUG--AGCGUg -3'
miRNA:   3'- uaGCaCCuUGCGCGCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 118551 0.7 0.875483
Target:  5'- -cUGUGGGugGCGUGCcaccgcacggacugaUCGUcGGCGUc -3'
miRNA:   3'- uaGCACCUugCGCGCG---------------AGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 208114 0.7 0.865366
Target:  5'- -aCGgcGGAGCcGCGuCGCUCGccGGCGCu -3'
miRNA:   3'- uaGCa-CCUUG-CGC-GCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 139545 0.7 0.857895
Target:  5'- cUCGcUGGAugcGCGCaGCGCUuuUGUGgaGGCGCg -3'
miRNA:   3'- uAGC-ACCU---UGCG-CGCGA--GCAU--UCGCG- -5'
1578 5' -55 NC_001347.2 + 103611 0.7 0.834329
Target:  5'- uUCGUGGGcgagcACGUcaagGUGCUCG-AAGUGCg -3'
miRNA:   3'- uAGCACCU-----UGCG----CGCGAGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 190682 0.71 0.826111
Target:  5'- --aGUGGAuaucguaagGCGCGUGCacCGUGAGCGa -3'
miRNA:   3'- uagCACCU---------UGCGCGCGa-GCAUUCGCg -5'
1578 5' -55 NC_001347.2 + 161115 0.71 0.809172
Target:  5'- uGUCGUGGuGACGCGCGaagCaUAGGCGa -3'
miRNA:   3'- -UAGCACC-UUGCGCGCga-GcAUUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.