Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1578 | 5' | -55 | NC_001347.2 | + | 161115 | 0.71 | 0.809172 |
Target: 5'- uGUCGUGGuGACGCGCGaagCaUAGGCGa -3' miRNA: 3'- -UAGCACC-UUGCGCGCga-GcAUUCGCg -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 52588 | 0.71 | 0.809172 |
Target: 5'- ---cUGGGACGCGUGCUCuc--GCGCg -3' miRNA: 3'- uagcACCUUGCGCGCGAGcauuCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 198381 | 0.72 | 0.782625 |
Target: 5'- --gGUGGGugGCGCGCggGUc-GCGCa -3' miRNA: 3'- uagCACCUugCGCGCGagCAuuCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 171739 | 0.72 | 0.764262 |
Target: 5'- uUUGgGGcAACGCGCGCUUGgacGCGCu -3' miRNA: 3'- uAGCaCC-UUGCGCGCGAGCauuCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 190508 | 0.72 | 0.745448 |
Target: 5'- -aCGaUGGAACGCGUGCgCGUccacAGCGUg -3' miRNA: 3'- uaGC-ACCUUGCGCGCGaGCAu---UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 208045 | 0.73 | 0.726252 |
Target: 5'- -aCGUcGGAGuCGCgGCGUUCGUuGGCGCc -3' miRNA: 3'- uaGCA-CCUU-GCG-CGCGAGCAuUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 48257 | 0.73 | 0.706742 |
Target: 5'- cUCGgccUGGGGCGCGgGCUCGUucGUGg -3' miRNA: 3'- uAGC---ACCUUGCGCgCGAGCAuuCGCg -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 25902 | 0.73 | 0.696892 |
Target: 5'- -cCGcUGGAACGCGCGCUUuu-GGCGg -3' miRNA: 3'- uaGC-ACCUUGCGCGCGAGcauUCGCg -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 185026 | 0.74 | 0.630961 |
Target: 5'- cUCGUGGGgguccaguucggccgGCGCGCGCUUGagcuGUGCg -3' miRNA: 3'- uAGCACCU---------------UGCGCGCGAGCauu-CGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 82290 | 0.76 | 0.557141 |
Target: 5'- -aCGUGGAAaagacuaaGCGCGUUCGacAGCGCu -3' miRNA: 3'- uaGCACCUUg-------CGCGCGAGCauUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 187474 | 1.11 | 0.004301 |
Target: 5'- gAUCGUGGAACGCGCGCUCGUAAGCGCg -3' miRNA: 3'- -UAGCACCUUGCGCGCGAGCAUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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