miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 1369 0.66 0.967724
Target:  5'- uGUCGccgcGGGACGCGUGgaUCGUAcugguggcuaccguGGUGCa -3'
miRNA:   3'- -UAGCa---CCUUGCGCGCg-AGCAU--------------UCGCG- -5'
1578 5' -55 NC_001347.2 + 2458 0.66 0.969793
Target:  5'- -gCGcUGGGACGCGCugcaccugcacccgcGCgccgcgcUGUGGGCGCg -3'
miRNA:   3'- uaGC-ACCUUGCGCG---------------CGa------GCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 13927 0.66 0.970931
Target:  5'- cGUCGgagaguauaaacUGGGGCGgGCGCgggguggcgaagCGgGAGCGCu -3'
miRNA:   3'- -UAGC------------ACCUUGCgCGCGa-----------GCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 15607 0.66 0.962286
Target:  5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3'
miRNA:   3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 25902 0.73 0.696892
Target:  5'- -cCGcUGGAACGCGCGCUUuu-GGCGg -3'
miRNA:   3'- uaGC-ACCUUGCGCGCGAGcauUCGCg -5'
1578 5' -55 NC_001347.2 + 29934 0.68 0.9333
Target:  5'- cUCGUGGAGgcacCGCGacaGCUaccgAGGCGCu -3'
miRNA:   3'- uAGCACCUU----GCGCg--CGAgca-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 48257 0.73 0.706742
Target:  5'- cUCGgccUGGGGCGCGgGCUCGUucGUGg -3'
miRNA:   3'- uAGC---ACCUUGCGCgCGAGCAuuCGCg -5'
1578 5' -55 NC_001347.2 + 52588 0.71 0.809172
Target:  5'- ---cUGGGACGCGUGCUCuc--GCGCg -3'
miRNA:   3'- uagcACCUUGCGCGCGAGcauuCGCG- -5'
1578 5' -55 NC_001347.2 + 71206 0.66 0.974419
Target:  5'- uAUCGguu--CGCGCGCUCGUcuuuucuucgauguGCGCa -3'
miRNA:   3'- -UAGCaccuuGCGCGCGAGCAuu------------CGCG- -5'
1578 5' -55 NC_001347.2 + 77602 0.65 0.976649
Target:  5'- -gUGUGGAGCGCcucguuGCGCcagagCGUGcaaacgGGCGUg -3'
miRNA:   3'- uaGCACCUUGCG------CGCGa----GCAU------UCGCG- -5'
1578 5' -55 NC_001347.2 + 82290 0.76 0.557141
Target:  5'- -aCGUGGAAaagacuaaGCGCGUUCGacAGCGCu -3'
miRNA:   3'- uaGCACCUUg-------CGCGCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 82811 0.66 0.974163
Target:  5'- -aCGUGcucaAAC-CGCG-UCGUGAGCGCg -3'
miRNA:   3'- uaGCACc---UUGcGCGCgAGCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 85521 0.69 0.879694
Target:  5'- -gCG-GGcGCGCGCGCUUG--AGCGUg -3'
miRNA:   3'- uaGCaCCuUGCGCGCGAGCauUCGCG- -5'
1578 5' -55 NC_001347.2 + 90977 0.67 0.947062
Target:  5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3'
miRNA:   3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 93390 0.66 0.973904
Target:  5'- -cUGUGGcAACGCGcCGCcgucccgUCGUAguacAGCGUa -3'
miRNA:   3'- uaGCACC-UUGCGC-GCG-------AGCAU----UCGCG- -5'
1578 5' -55 NC_001347.2 + 93462 0.66 0.968622
Target:  5'- cUCGacGGcGAUGCGCGCcCGaUAAGCGUc -3'
miRNA:   3'- uAGCa-CC-UUGCGCGCGaGC-AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 94357 0.65 0.975922
Target:  5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3'
miRNA:   3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5'
1578 5' -55 NC_001347.2 + 96189 0.68 0.9333
Target:  5'- cUCG-GGcACGgGCGUggcggcCGUAGGCGCc -3'
miRNA:   3'- uAGCaCCuUGCgCGCGa-----GCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 99566 0.67 0.942702
Target:  5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3'
miRNA:   3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 103611 0.7 0.834329
Target:  5'- uUCGUGGGcgagcACGUcaagGUGCUCG-AAGUGCg -3'
miRNA:   3'- uAGCACCU-----UGCG----CGCGAGCaUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.