miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 110206 0.66 0.962286
Target:  5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3'
miRNA:   3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5'
1578 5' -55 NC_001347.2 + 110472 0.66 0.971489
Target:  5'- -cCGcUGGAcCGCGUGCcCGUuAGCGg -3'
miRNA:   3'- uaGC-ACCUuGCGCGCGaGCAuUCGCg -5'
1578 5' -55 NC_001347.2 + 118551 0.7 0.875483
Target:  5'- -cUGUGGGugGCGUGCcaccgcacggacugaUCGUcGGCGUc -3'
miRNA:   3'- uaGCACCUugCGCGCG---------------AGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 126681 0.68 0.926696
Target:  5'- -gCGUGGuggcuuacgacgcuGACGCgGCGCcCG-AAGCGCa -3'
miRNA:   3'- uaGCACC--------------UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 134992 0.68 0.922979
Target:  5'- -aCG-GGGACGUGCGUUCGUGccGGgGa -3'
miRNA:   3'- uaGCaCCUUGCGCGCGAGCAU--UCgCg -5'
1578 5' -55 NC_001347.2 + 139545 0.7 0.857895
Target:  5'- cUCGcUGGAugcGCGCaGCGCUuuUGUGgaGGCGCg -3'
miRNA:   3'- uAGC-ACCU---UGCG-CGCGA--GCAU--UCGCG- -5'
1578 5' -55 NC_001347.2 + 140679 0.66 0.962286
Target:  5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3'
miRNA:   3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 142249 0.68 0.9333
Target:  5'- uUCGUGGAugGC-UGCg---AGGCGCu -3'
miRNA:   3'- uAGCACCUugCGcGCGagcaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 147908 0.66 0.971489
Target:  5'- -cCGUGGGugGCGCgGUggccuccguggUCGaAGGCGUu -3'
miRNA:   3'- uaGCACCUugCGCG-CG-----------AGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 151327 0.67 0.958805
Target:  5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3'
miRNA:   3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 156959 0.65 0.976649
Target:  5'- cAUCGUGGuggcgaGCGCGCUCc-GGGCcaucGCg -3'
miRNA:   3'- -UAGCACCuug---CGCGCGAGcaUUCG----CG- -5'
1578 5' -55 NC_001347.2 + 158173 0.69 0.899587
Target:  5'- cAUC-UGG-ACGCGCGCUCGcuGGUGg -3'
miRNA:   3'- -UAGcACCuUGCGCGCGAGCauUCGCg -5'
1578 5' -55 NC_001347.2 + 161115 0.71 0.809172
Target:  5'- uGUCGUGGuGACGCGCGaagCaUAGGCGa -3'
miRNA:   3'- -UAGCACC-UUGCGCGCga-GcAUUCGCg -5'
1578 5' -55 NC_001347.2 + 165450 0.69 0.905776
Target:  5'- --gGUGGGACGCG-GUUUGgcguGCGCg -3'
miRNA:   3'- uagCACCUUGCGCgCGAGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 171739 0.72 0.764262
Target:  5'- uUUGgGGcAACGCGCGCUUGgacGCGCu -3'
miRNA:   3'- uAGCaCC-UUGCGCGCGAGCauuCGCG- -5'
1578 5' -55 NC_001347.2 + 172046 0.71 0.809172
Target:  5'- cAUCGcc-AGCGCGCGCUgGgAAGCGCu -3'
miRNA:   3'- -UAGCaccUUGCGCGCGAgCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 172146 0.68 0.917474
Target:  5'- cAUCuGUGGGGCGUGaCGC-CGUcAGUGUg -3'
miRNA:   3'- -UAG-CACCUUGCGC-GCGaGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 173983 0.67 0.942702
Target:  5'- -gCGUgccugGGAACGCGCGCac---GGCGCg -3'
miRNA:   3'- uaGCA-----CCUUGCGCGCGagcauUCGCG- -5'
1578 5' -55 NC_001347.2 + 183483 0.66 0.962286
Target:  5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3'
miRNA:   3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 185026 0.74 0.630961
Target:  5'- cUCGUGGGgguccaguucggccgGCGCGCGCUUGagcuGUGCg -3'
miRNA:   3'- uAGCACCU---------------UGCGCGCGAGCauu-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.