miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 187474 1.11 0.004301
Target:  5'- gAUCGUGGAACGCGCGCUCGUAAGCGCg -3'
miRNA:   3'- -UAGCACCUUGCGCGCGAGCAUUCGCG- -5'
1578 5' -55 NC_001347.2 + 190508 0.72 0.745448
Target:  5'- -aCGaUGGAACGCGUGCgCGUccacAGCGUg -3'
miRNA:   3'- uaGC-ACCUUGCGCGCGaGCAu---UCGCG- -5'
1578 5' -55 NC_001347.2 + 190682 0.71 0.826111
Target:  5'- --aGUGGAuaucguaagGCGCGUGCacCGUGAGCGa -3'
miRNA:   3'- uagCACCU---------UGCGCGCGa-GCAUUCGCg -5'
1578 5' -55 NC_001347.2 + 193475 0.66 0.968622
Target:  5'- uUCGUGGAcGCGUacgGCGC-CGUGuuCGCc -3'
miRNA:   3'- uAGCACCU-UGCG---CGCGaGCAUucGCG- -5'
1578 5' -55 NC_001347.2 + 197680 0.67 0.942702
Target:  5'- -aCGUGGAGCGCGCuGCgc---AGgGCa -3'
miRNA:   3'- uaGCACCUUGCGCG-CGagcauUCgCG- -5'
1578 5' -55 NC_001347.2 + 198381 0.72 0.782625
Target:  5'- --gGUGGGugGCGCGCggGUc-GCGCa -3'
miRNA:   3'- uagCACCUugCGCGCGagCAuuCGCG- -5'
1578 5' -55 NC_001347.2 + 199256 0.66 0.965557
Target:  5'- -gCGUGaGAu--CGCGCUCGccAGGCGCu -3'
miRNA:   3'- uaGCAC-CUugcGCGCGAGCa-UUCGCG- -5'
1578 5' -55 NC_001347.2 + 199885 0.67 0.947062
Target:  5'- -cCGUGGcgcuGCGCGCccgcguGCUCGUGAaaaCGCu -3'
miRNA:   3'- uaGCACCu---UGCGCG------CGAGCAUUc--GCG- -5'
1578 5' -55 NC_001347.2 + 200598 0.67 0.942702
Target:  5'- cUCaUGGAGuuUGCGCGCgUCGggcuGCGCg -3'
miRNA:   3'- uAGcACCUU--GCGCGCG-AGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 208045 0.73 0.726252
Target:  5'- -aCGUcGGAGuCGCgGCGUUCGUuGGCGCc -3'
miRNA:   3'- uaGCA-CCUU-GCG-CGCGAGCAuUCGCG- -5'
1578 5' -55 NC_001347.2 + 208114 0.7 0.865366
Target:  5'- -aCGgcGGAGCcGCGuCGCUCGccGGCGCu -3'
miRNA:   3'- uaGCa-CCUUG-CGC-GCGAGCauUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.