Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1578 | 5' | -55 | NC_001347.2 | + | 156959 | 0.65 | 0.976649 |
Target: 5'- cAUCGUGGuggcgaGCGCGCUCc-GGGCcaucGCg -3' miRNA: 3'- -UAGCACCuug---CGCGCGAGcaUUCG----CG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 151327 | 0.67 | 0.958805 |
Target: 5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3' miRNA: 3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 147908 | 0.66 | 0.971489 |
Target: 5'- -cCGUGGGugGCGCgGUggccuccguggUCGaAGGCGUu -3' miRNA: 3'- uaGCACCUugCGCG-CG-----------AGCaUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 142249 | 0.68 | 0.9333 |
Target: 5'- uUCGUGGAugGC-UGCg---AGGCGCu -3' miRNA: 3'- uAGCACCUugCGcGCGagcaUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 140679 | 0.66 | 0.962286 |
Target: 5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3' miRNA: 3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 139545 | 0.7 | 0.857895 |
Target: 5'- cUCGcUGGAugcGCGCaGCGCUuuUGUGgaGGCGCg -3' miRNA: 3'- uAGC-ACCU---UGCG-CGCGA--GCAU--UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 134992 | 0.68 | 0.922979 |
Target: 5'- -aCG-GGGACGUGCGUUCGUGccGGgGa -3' miRNA: 3'- uaGCaCCUUGCGCGCGAGCAU--UCgCg -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 126681 | 0.68 | 0.926696 |
Target: 5'- -gCGUGGuggcuuacgacgcuGACGCgGCGCcCG-AAGCGCa -3' miRNA: 3'- uaGCACC--------------UUGCG-CGCGaGCaUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 118551 | 0.7 | 0.875483 |
Target: 5'- -cUGUGGGugGCGUGCcaccgcacggacugaUCGUcGGCGUc -3' miRNA: 3'- uaGCACCUugCGCGCG---------------AGCAuUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 110472 | 0.66 | 0.971489 |
Target: 5'- -cCGcUGGAcCGCGUGCcCGUuAGCGg -3' miRNA: 3'- uaGC-ACCUuGCGCGCGaGCAuUCGCg -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 110206 | 0.66 | 0.962286 |
Target: 5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3' miRNA: 3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 103611 | 0.7 | 0.834329 |
Target: 5'- uUCGUGGGcgagcACGUcaagGUGCUCG-AAGUGCg -3' miRNA: 3'- uAGCACCU-----UGCG----CGCGAGCaUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 99566 | 0.67 | 0.942702 |
Target: 5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3' miRNA: 3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 96189 | 0.68 | 0.9333 |
Target: 5'- cUCG-GGcACGgGCGUggcggcCGUAGGCGCc -3' miRNA: 3'- uAGCaCCuUGCgCGCGa-----GCAUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 94357 | 0.65 | 0.975922 |
Target: 5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3' miRNA: 3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 93462 | 0.66 | 0.968622 |
Target: 5'- cUCGacGGcGAUGCGCGCcCGaUAAGCGUc -3' miRNA: 3'- uAGCa-CC-UUGCGCGCGaGC-AUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 93390 | 0.66 | 0.973904 |
Target: 5'- -cUGUGGcAACGCGcCGCcgucccgUCGUAguacAGCGUa -3' miRNA: 3'- uaGCACC-UUGCGC-GCG-------AGCAU----UCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 90977 | 0.67 | 0.947062 |
Target: 5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3' miRNA: 3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 85521 | 0.69 | 0.879694 |
Target: 5'- -gCG-GGcGCGCGCGCUUG--AGCGUg -3' miRNA: 3'- uaGCaCCuUGCGCGCGAGCauUCGCG- -5' |
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1578 | 5' | -55 | NC_001347.2 | + | 82811 | 0.66 | 0.974163 |
Target: 5'- -aCGUGcucaAAC-CGCG-UCGUGAGCGCg -3' miRNA: 3'- uaGCACc---UUGcGCGCgAGCAUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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