miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1578 5' -55 NC_001347.2 + 200598 0.67 0.942702
Target:  5'- cUCaUGGAGuuUGCGCGCgUCGggcuGCGCg -3'
miRNA:   3'- uAGcACCUU--GCGCGCG-AGCauu-CGCG- -5'
1578 5' -55 NC_001347.2 + 99566 0.67 0.942702
Target:  5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3'
miRNA:   3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 173983 0.67 0.942702
Target:  5'- -gCGUgccugGGAACGCGCGCac---GGCGCg -3'
miRNA:   3'- uaGCA-----CCUUGCGCGCGagcauUCGCG- -5'
1578 5' -55 NC_001347.2 + 199885 0.67 0.947062
Target:  5'- -cCGUGGcgcuGCGCGCccgcguGCUCGUGAaaaCGCu -3'
miRNA:   3'- uaGCACCu---UGCGCG------CGAGCAUUc--GCG- -5'
1578 5' -55 NC_001347.2 + 151327 0.67 0.958805
Target:  5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3'
miRNA:   3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 110206 0.66 0.962286
Target:  5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3'
miRNA:   3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5'
1578 5' -55 NC_001347.2 + 183483 0.66 0.962286
Target:  5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3'
miRNA:   3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5'
1578 5' -55 NC_001347.2 + 90977 0.67 0.947062
Target:  5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3'
miRNA:   3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5'
1578 5' -55 NC_001347.2 + 15607 0.66 0.962286
Target:  5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3'
miRNA:   3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5'
1578 5' -55 NC_001347.2 + 140679 0.66 0.962286
Target:  5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3'
miRNA:   3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5'
1578 5' -55 NC_001347.2 + 94357 0.65 0.975922
Target:  5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3'
miRNA:   3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.