Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1578 | 5' | -55 | NC_001347.2 | + | 200598 | 0.67 | 0.942702 |
Target: 5'- cUCaUGGAGuuUGCGCGCgUCGggcuGCGCg -3' miRNA: 3'- uAGcACCUU--GCGCGCG-AGCauu-CGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 99566 | 0.67 | 0.942702 |
Target: 5'- cUUGUG--ACcCGCGCUCGUcgucggGAGCGCg -3' miRNA: 3'- uAGCACcuUGcGCGCGAGCA------UUCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 173983 | 0.67 | 0.942702 |
Target: 5'- -gCGUgccugGGAACGCGCGCac---GGCGCg -3' miRNA: 3'- uaGCA-----CCUUGCGCGCGagcauUCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 199885 | 0.67 | 0.947062 |
Target: 5'- -cCGUGGcgcuGCGCGCccgcguGCUCGUGAaaaCGCu -3' miRNA: 3'- uaGCACCu---UGCGCG------CGAGCAUUc--GCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 151327 | 0.67 | 0.958805 |
Target: 5'- uUCGUGGccuGACGcCGCagGCUCugguGGCGCg -3' miRNA: 3'- uAGCACC---UUGC-GCG--CGAGcau-UCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 110206 | 0.66 | 0.962286 |
Target: 5'- -aCGUGGAAgGCG-GCUCGcuggAAGC-Cg -3' miRNA: 3'- uaGCACCUUgCGCgCGAGCa---UUCGcG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 183483 | 0.66 | 0.962286 |
Target: 5'- cUCG-GGAGaCGCGCGCagccccAGCGCg -3' miRNA: 3'- uAGCaCCUU-GCGCGCGagcau-UCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 90977 | 0.67 | 0.947062 |
Target: 5'- -aUGUGGcGACGCuGUGC-CGcAAGCGCu -3' miRNA: 3'- uaGCACC-UUGCG-CGCGaGCaUUCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 15607 | 0.66 | 0.962286 |
Target: 5'- cAUUGccUGGuGACGaCGCGUUCGUcgacgcgcgaGGGCGCg -3' miRNA: 3'- -UAGC--ACC-UUGC-GCGCGAGCA----------UUCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 140679 | 0.66 | 0.962286 |
Target: 5'- -aUGaUGGGGCGCgGCGgUCGcauguUGGGCGCu -3' miRNA: 3'- uaGC-ACCUUGCG-CGCgAGC-----AUUCGCG- -5' |
|||||||
1578 | 5' | -55 | NC_001347.2 | + | 94357 | 0.65 | 0.975922 |
Target: 5'- cGUCGUccucaucuccgccuGGAGCGCG-GCcCGUGgaucggccAGCGCu -3' miRNA: 3'- -UAGCA--------------CCUUGCGCgCGaGCAU--------UCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home