miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15780 3' -59.1 NC_004065.1 + 133872 1.1 0.00227
Target:  5'- aUCCACUUGAGGAGCGCGACCCCCACGg -3'
miRNA:   3'- -AGGUGAACUCCUCGCGCUGGGGGUGC- -5'
15780 3' -59.1 NC_004065.1 + 1004 0.73 0.485738
Target:  5'- gCCGCUgucGGGAGacgaGCGugCCCCGCa -3'
miRNA:   3'- aGGUGAac-UCCUCg---CGCugGGGGUGc -5'
15780 3' -59.1 NC_004065.1 + 419 0.71 0.618089
Target:  5'- uUCCGCgcccGGGGGGUGa-ACCCCCugGa -3'
miRNA:   3'- -AGGUGaa--CUCCUCGCgcUGGGGGugC- -5'
15780 3' -59.1 NC_004065.1 + 187311 0.71 0.627803
Target:  5'- aUCACUggggcgGAGGAGCGCucgccGACCUCUGCa -3'
miRNA:   3'- aGGUGAa-----CUCCUCGCG-----CUGGGGGUGc -5'
15780 3' -59.1 NC_004065.1 + 145174 0.7 0.647232
Target:  5'- gUCCACgUGGGaGAGCGUcauGACgCCCGCu -3'
miRNA:   3'- -AGGUGaACUC-CUCGCG---CUGgGGGUGc -5'
15780 3' -59.1 NC_004065.1 + 173975 0.7 0.656934
Target:  5'- gUCCACgaccuGGGGCGCGAaCCCUC-CGa -3'
miRNA:   3'- -AGGUGaacu-CCUCGCGCU-GGGGGuGC- -5'
15780 3' -59.1 NC_004065.1 + 121294 0.7 0.666618
Target:  5'- cCCGCgUGAGGGcgacGCGCG-CCCCCuucugGCGa -3'
miRNA:   3'- aGGUGaACUCCU----CGCGCuGGGGG-----UGC- -5'
15780 3' -59.1 NC_004065.1 + 226183 0.7 0.666618
Target:  5'- uUCCcaGCUUaacGAGG-GCGCGGgCUCCACGg -3'
miRNA:   3'- -AGG--UGAA---CUCCuCGCGCUgGGGGUGC- -5'
15780 3' -59.1 NC_004065.1 + 110838 0.7 0.695489
Target:  5'- aCCAg-UGcGGGGCGCgGGCCgCCCGCGu -3'
miRNA:   3'- aGGUgaACuCCUCGCG-CUGG-GGGUGC- -5'
15780 3' -59.1 NC_004065.1 + 58551 0.7 0.695489
Target:  5'- uUUCGCUUGGGGcggauguucGGCGCGAUCCa-GCGg -3'
miRNA:   3'- -AGGUGAACUCC---------UCGCGCUGGGggUGC- -5'
15780 3' -59.1 NC_004065.1 + 114166 0.69 0.714511
Target:  5'- uUCCcgggACUcUGAGGAGCGCGccGCCggCCGCGa -3'
miRNA:   3'- -AGG----UGA-ACUCCUCGCGC--UGGg-GGUGC- -5'
15780 3' -59.1 NC_004065.1 + 60411 0.68 0.760819
Target:  5'- uUCCGac-GAGGuuaAGCGacgugaCGGCCCCCGCGa -3'
miRNA:   3'- -AGGUgaaCUCC---UCGC------GCUGGGGGUGC- -5'
15780 3' -59.1 NC_004065.1 + 188759 0.68 0.769803
Target:  5'- cCCACcaGGGcGAuCGCGACCgCCCACa -3'
miRNA:   3'- aGGUGaaCUC-CUcGCGCUGG-GGGUGc -5'
15780 3' -59.1 NC_004065.1 + 16265 0.68 0.769803
Target:  5'- cUCCGCaucGAGGcGUGCGccACCCUCACa -3'
miRNA:   3'- -AGGUGaa-CUCCuCGCGC--UGGGGGUGc -5'
15780 3' -59.1 NC_004065.1 + 57924 0.68 0.778677
Target:  5'- --aGCUgcgGAGGAGcCGCGcuacguCCCCCGCu -3'
miRNA:   3'- aggUGAa--CUCCUC-GCGCu-----GGGGGUGc -5'
15780 3' -59.1 NC_004065.1 + 197157 0.68 0.796063
Target:  5'- ------cGAGGAGCGCGACCUguCCAUc -3'
miRNA:   3'- aggugaaCUCCUCGCGCUGGG--GGUGc -5'
15780 3' -59.1 NC_004065.1 + 89659 0.68 0.804559
Target:  5'- cCCuuCUUGAGGGGCGuCGuCCCgaaCGCGc -3'
miRNA:   3'- aGGu-GAACUCCUCGC-GCuGGGg--GUGC- -5'
15780 3' -59.1 NC_004065.1 + 108720 0.67 0.812915
Target:  5'- uUUCGCcagaaGGGGGCGCGcgucGCCCUCACGc -3'
miRNA:   3'- -AGGUGaac--UCCUCGCGC----UGGGGGUGC- -5'
15780 3' -59.1 NC_004065.1 + 109635 0.67 0.812915
Target:  5'- aCCACcgucGAGGGcguccuGCGCGACUCCgGCa -3'
miRNA:   3'- aGGUGaa--CUCCU------CGCGCUGGGGgUGc -5'
15780 3' -59.1 NC_004065.1 + 163822 0.67 0.812915
Target:  5'- cUCCACgcagcgGGGGggagcccaAGCGCcagaaGACCCaCCACGa -3'
miRNA:   3'- -AGGUGaa----CUCC--------UCGCG-----CUGGG-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.