Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 89659 | 0.68 | 0.804559 |
Target: 5'- cCCuuCUUGAGGGGCGuCGuCCCgaaCGCGc -3' miRNA: 3'- aGGu-GAACUCCUCGC-GCuGGGg--GUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 197157 | 0.68 | 0.796063 |
Target: 5'- ------cGAGGAGCGCGACCUguCCAUc -3' miRNA: 3'- aggugaaCUCCUCGCGCUGGG--GGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 57924 | 0.68 | 0.778677 |
Target: 5'- --aGCUgcgGAGGAGcCGCGcuacguCCCCCGCu -3' miRNA: 3'- aggUGAa--CUCCUC-GCGCu-----GGGGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 16265 | 0.68 | 0.769803 |
Target: 5'- cUCCGCaucGAGGcGUGCGccACCCUCACa -3' miRNA: 3'- -AGGUGaa-CUCCuCGCGC--UGGGGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 188759 | 0.68 | 0.769803 |
Target: 5'- cCCACcaGGGcGAuCGCGACCgCCCACa -3' miRNA: 3'- aGGUGaaCUC-CUcGCGCUGG-GGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 60411 | 0.68 | 0.760819 |
Target: 5'- uUCCGac-GAGGuuaAGCGacgugaCGGCCCCCGCGa -3' miRNA: 3'- -AGGUgaaCUCC---UCGC------GCUGGGGGUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 114166 | 0.69 | 0.714511 |
Target: 5'- uUCCcgggACUcUGAGGAGCGCGccGCCggCCGCGa -3' miRNA: 3'- -AGG----UGA-ACUCCUCGCGC--UGGg-GGUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 110838 | 0.7 | 0.695489 |
Target: 5'- aCCAg-UGcGGGGCGCgGGCCgCCCGCGu -3' miRNA: 3'- aGGUgaACuCCUCGCG-CUGG-GGGUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 58551 | 0.7 | 0.695489 |
Target: 5'- uUUCGCUUGGGGcggauguucGGCGCGAUCCa-GCGg -3' miRNA: 3'- -AGGUGAACUCC---------UCGCGCUGGGggUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 121294 | 0.7 | 0.666618 |
Target: 5'- cCCGCgUGAGGGcgacGCGCG-CCCCCuucugGCGa -3' miRNA: 3'- aGGUGaACUCCU----CGCGCuGGGGG-----UGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 226183 | 0.7 | 0.666618 |
Target: 5'- uUCCcaGCUUaacGAGG-GCGCGGgCUCCACGg -3' miRNA: 3'- -AGG--UGAA---CUCCuCGCGCUgGGGGUGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 173975 | 0.7 | 0.656934 |
Target: 5'- gUCCACgaccuGGGGCGCGAaCCCUC-CGa -3' miRNA: 3'- -AGGUGaacu-CCUCGCGCU-GGGGGuGC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 145174 | 0.7 | 0.647232 |
Target: 5'- gUCCACgUGGGaGAGCGUcauGACgCCCGCu -3' miRNA: 3'- -AGGUGaACUC-CUCGCG---CUGgGGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 187311 | 0.71 | 0.627803 |
Target: 5'- aUCACUggggcgGAGGAGCGCucgccGACCUCUGCa -3' miRNA: 3'- aGGUGAa-----CUCCUCGCG-----CUGGGGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 419 | 0.71 | 0.618089 |
Target: 5'- uUCCGCgcccGGGGGGUGa-ACCCCCugGa -3' miRNA: 3'- -AGGUGaa--CUCCUCGCgcUGGGGGugC- -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 1004 | 0.73 | 0.485738 |
Target: 5'- gCCGCUgucGGGAGacgaGCGugCCCCGCa -3' miRNA: 3'- aGGUGAac-UCCUCg---CGCugGGGGUGc -5' |
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15780 | 3' | -59.1 | NC_004065.1 | + | 133872 | 1.1 | 0.00227 |
Target: 5'- aUCCACUUGAGGAGCGCGACCCCCACGg -3' miRNA: 3'- -AGGUGAACUCCUCGCGCUGGGGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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