Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 226873 | 0.66 | 0.887286 |
Target: 5'- gCCACUUGAGGuAGaaacuUGGCCCgggaCCGCGg -3' miRNA: 3'- aGGUGAACUCC-UCgc---GCUGGG----GGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 226183 | 0.7 | 0.666618 |
Target: 5'- uUCCcaGCUUaacGAGG-GCGCGGgCUCCACGg -3' miRNA: 3'- -AGG--UGAA---CUCCuCGCGCUgGGGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 224593 | 0.67 | 0.842491 |
Target: 5'- aUCGCcgucGGGGAGUuguucccaacgcacGCGGCCCuCCACGg -3' miRNA: 3'- aGGUGaa--CUCCUCG--------------CGCUGGG-GGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 197157 | 0.68 | 0.796063 |
Target: 5'- ------cGAGGAGCGCGACCUguCCAUc -3' miRNA: 3'- aggugaaCUCCUCGCGCUGGG--GGUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 188759 | 0.68 | 0.769803 |
Target: 5'- cCCACcaGGGcGAuCGCGACCgCCCACa -3' miRNA: 3'- aGGUGaaCUC-CUcGCGCUGG-GGGUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 187311 | 0.71 | 0.627803 |
Target: 5'- aUCACUggggcgGAGGAGCGCucgccGACCUCUGCa -3' miRNA: 3'- aGGUGAa-----CUCCUCGCG-----CUGGGGGUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 176159 | 0.66 | 0.880687 |
Target: 5'- gCCAacgGAGuGgccaucccGGCGCGACCgCCGCGa -3' miRNA: 3'- aGGUgaaCUC-C--------UCGCGCUGGgGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 173975 | 0.7 | 0.656934 |
Target: 5'- gUCCACgaccuGGGGCGCGAaCCCUC-CGa -3' miRNA: 3'- -AGGUGaacu-CCUCGCGCU-GGGGGuGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 163822 | 0.67 | 0.812915 |
Target: 5'- cUCCACgcagcgGGGGggagcccaAGCGCcagaaGACCCaCCACGa -3' miRNA: 3'- -AGGUGaa----CUCC--------UCGCG-----CUGGG-GGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 159713 | 0.66 | 0.873197 |
Target: 5'- uUCCugUacgcggccgugUGGGGGGUGCugcugaaGGCCgCCGCGg -3' miRNA: 3'- -AGGugA-----------ACUCCUCGCG-------CUGGgGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 154332 | 0.67 | 0.829176 |
Target: 5'- -aCGCagGAGGugggGGCGCGGCCaagaaucagCCCGCGg -3' miRNA: 3'- agGUGaaCUCC----UCGCGCUGG---------GGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 153306 | 0.67 | 0.829176 |
Target: 5'- cCCGCc-GAGGAGUGCaACCUCgACGc -3' miRNA: 3'- aGGUGaaCUCCUCGCGcUGGGGgUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 145174 | 0.7 | 0.647232 |
Target: 5'- gUCCACgUGGGaGAGCGUcauGACgCCCGCu -3' miRNA: 3'- -AGGUGaACUC-CUCGCG---CUGgGGGUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 133872 | 1.1 | 0.00227 |
Target: 5'- aUCCACUUGAGGAGCGCGACCCCCACGg -3' miRNA: 3'- -AGGUGAACUCCUCGCGCUGGGGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 121294 | 0.7 | 0.666618 |
Target: 5'- cCCGCgUGAGGGcgacGCGCG-CCCCCuucugGCGa -3' miRNA: 3'- aGGUGaACUCCU----CGCGCuGGGGG-----UGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 120174 | 0.66 | 0.880687 |
Target: 5'- gCCACcugggUGAGGGGaGCGACgCCgCGCu -3' miRNA: 3'- aGGUGa----ACUCCUCgCGCUG-GGgGUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 114166 | 0.69 | 0.714511 |
Target: 5'- uUCCcgggACUcUGAGGAGCGCGccGCCggCCGCGa -3' miRNA: 3'- -AGG----UGA-ACUCCUCGCGC--UGGg-GGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 110838 | 0.7 | 0.695489 |
Target: 5'- aCCAg-UGcGGGGCGCgGGCCgCCCGCGu -3' miRNA: 3'- aGGUgaACuCCUCGCG-CUGG-GGGUGC- -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 109635 | 0.67 | 0.812915 |
Target: 5'- aCCACcgucGAGGGcguccuGCGCGACUCCgGCa -3' miRNA: 3'- aGGUGaa--CUCCU------CGCGCUGGGGgUGc -5' |
|||||||
15780 | 3' | -59.1 | NC_004065.1 | + | 108720 | 0.67 | 0.812915 |
Target: 5'- uUUCGCcagaaGGGGGCGCGcgucGCCCUCACGc -3' miRNA: 3'- -AGGUGaac--UCCUCGCGC----UGGGGGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home