miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15786 5' -56.3 NC_004065.1 + 212965 0.66 0.957376
Target:  5'- ----gAUCGgUGGACCUCUCUGGugGg -3'
miRNA:   3'- gauagUGGCgGUCUGGAGAGGCCugU- -5'
15786 5' -56.3 NC_004065.1 + 173776 0.66 0.957376
Target:  5'- -gAUCGCCGCCagGGACa--UCCGG-CGa -3'
miRNA:   3'- gaUAGUGGCGG--UCUGgagAGGCCuGU- -5'
15786 5' -56.3 NC_004065.1 + 18211 0.66 0.957012
Target:  5'- aCUGUCGacaaGUCGGcucuuccucccgcGCCUCUCCGGAg- -3'
miRNA:   3'- -GAUAGUgg--CGGUC-------------UGGAGAGGCCUgu -5'
15786 5' -56.3 NC_004065.1 + 120413 0.66 0.952476
Target:  5'- --uUCGCCGCguucuucucgcucuCcGACCUCgUCCGGGCc -3'
miRNA:   3'- gauAGUGGCG--------------GuCUGGAG-AGGCCUGu -5'
15786 5' -56.3 NC_004065.1 + 18456 0.66 0.949688
Target:  5'- ----aGCCGCCGGAuuCCUCgaaCGGGCc -3'
miRNA:   3'- gauagUGGCGGUCU--GGAGag-GCCUGu -5'
15786 5' -56.3 NC_004065.1 + 166994 0.66 0.949688
Target:  5'- --cUCGCgCGCCGGACagCUCUCCGuGGu- -3'
miRNA:   3'- gauAGUG-GCGGUCUG--GAGAGGC-CUgu -5'
15786 5' -56.3 NC_004065.1 + 171600 0.66 0.949688
Target:  5'- --uUCACCGCCAGcaaccgcaucGCCUUUCacgaGGuCAa -3'
miRNA:   3'- gauAGUGGCGGUC----------UGGAGAGg---CCuGU- -5'
15786 5' -56.3 NC_004065.1 + 57767 0.66 0.949688
Target:  5'- -cGUCGCCGCC--GCCgucgCUCuCGGugGu -3'
miRNA:   3'- gaUAGUGGCGGucUGGa---GAG-GCCugU- -5'
15786 5' -56.3 NC_004065.1 + 96858 0.66 0.949688
Target:  5'- gCUGUCGCCGCgGGcGCCgUUCUGGcCGu -3'
miRNA:   3'- -GAUAGUGGCGgUC-UGGaGAGGCCuGU- -5'
15786 5' -56.3 NC_004065.1 + 15365 0.66 0.945518
Target:  5'- --uUCACCGaCCuguGGACaaauUCUUCGGACAc -3'
miRNA:   3'- gauAGUGGC-GG---UCUGg---AGAGGCCUGU- -5'
15786 5' -56.3 NC_004065.1 + 112851 0.66 0.945518
Target:  5'- aUGUUGCCGUCGGACagcagCUCgUCCGG-CAg -3'
miRNA:   3'- gAUAGUGGCGGUCUG-----GAG-AGGCCuGU- -5'
15786 5' -56.3 NC_004065.1 + 163976 0.66 0.942911
Target:  5'- gCUGUcCGCCGUCAGcgauggugcguuaccACCcuccUCUCCGGugAc -3'
miRNA:   3'- -GAUA-GUGGCGGUC---------------UGG----AGAGGCCugU- -5'
15786 5' -56.3 NC_004065.1 + 204531 0.66 0.941129
Target:  5'- -cGUCGuggUCGCCAGacGCCUCgUCGGGCGg -3'
miRNA:   3'- gaUAGU---GGCGGUC--UGGAGaGGCCUGU- -5'
15786 5' -56.3 NC_004065.1 + 193593 0.66 0.941129
Target:  5'- -gGUC-UCGCCAGACCUUgacCUGGAg- -3'
miRNA:   3'- gaUAGuGGCGGUCUGGAGa--GGCCUgu -5'
15786 5' -56.3 NC_004065.1 + 53698 0.66 0.941129
Target:  5'- gUGUCGCCGCCcGACCgccCUCCu---- -3'
miRNA:   3'- gAUAGUGGCGGuCUGGa--GAGGccugu -5'
15786 5' -56.3 NC_004065.1 + 23372 0.66 0.936516
Target:  5'- ---aCACCaCC---CCUCUCCGGACAg -3'
miRNA:   3'- gauaGUGGcGGucuGGAGAGGCCUGU- -5'
15786 5' -56.3 NC_004065.1 + 199010 0.66 0.936516
Target:  5'- --uUCGCCGUCAccGGCCUCUCCa---- -3'
miRNA:   3'- gauAGUGGCGGU--CUGGAGAGGccugu -5'
15786 5' -56.3 NC_004065.1 + 228755 0.66 0.936516
Target:  5'- gUGUCACaCGaCCuGGACCUCaugaCGGACGc -3'
miRNA:   3'- gAUAGUG-GC-GG-UCUGGAGag--GCCUGU- -5'
15786 5' -56.3 NC_004065.1 + 141637 0.67 0.933641
Target:  5'- -cAUCACgCGCCAGcuggccuacaccgccACCUUgCUGGGCAg -3'
miRNA:   3'- gaUAGUG-GCGGUC---------------UGGAGaGGCCUGU- -5'
15786 5' -56.3 NC_004065.1 + 204317 0.67 0.93168
Target:  5'- aCUGUUAUCG-CGGGCC-C-CCGGACGa -3'
miRNA:   3'- -GAUAGUGGCgGUCUGGaGaGGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.