miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 3' -54.2 NC_004065.1 + 88448 0.66 0.980464
Target:  5'- aGUGCCGGGcGAGGgcgucgcaggUCUUGCGcgcgACg -3'
miRNA:   3'- aCACGGCCCuCUUCa---------AGGACGUca--UG- -5'
15788 3' -54.2 NC_004065.1 + 145505 0.66 0.980464
Target:  5'- -cUGcCCGaGGAGAaccAGgccaUCCUGCAGUGu -3'
miRNA:   3'- acAC-GGC-CCUCU---UCa---AGGACGUCAUg -5'
15788 3' -54.2 NC_004065.1 + 106737 0.66 0.978245
Target:  5'- -cUGCauccaCGGcGAGAcGgaCCUGCAGUACa -3'
miRNA:   3'- acACG-----GCC-CUCUuCaaGGACGUCAUG- -5'
15788 3' -54.2 NC_004065.1 + 162020 0.66 0.978245
Target:  5'- -cUGCCGGuAGAacGGcUCCUccccGCAGUACa -3'
miRNA:   3'- acACGGCCcUCU--UCaAGGA----CGUCAUG- -5'
15788 3' -54.2 NC_004065.1 + 172099 0.66 0.975845
Target:  5'- --gGCCGGGGGAGGcggcUCUgaccGCGGUGg -3'
miRNA:   3'- acaCGGCCCUCUUCa---AGGa---CGUCAUg -5'
15788 3' -54.2 NC_004065.1 + 92479 0.66 0.975595
Target:  5'- aUGUGCCGGGccagaggcugaccGGAAGUcCCgccuuuugGCccGGUGCc -3'
miRNA:   3'- -ACACGGCCC-------------UCUUCAaGGa-------CG--UCAUG- -5'
15788 3' -54.2 NC_004065.1 + 136336 0.66 0.973257
Target:  5'- --aGCCGGuGGGucAGUUCggCUGCAGUGg -3'
miRNA:   3'- acaCGGCC-CUCu-UCAAG--GACGUCAUg -5'
15788 3' -54.2 NC_004065.1 + 161751 0.66 0.96749
Target:  5'- cGUGCCGGu-GggGUUCCUuCGGccgACc -3'
miRNA:   3'- aCACGGCCcuCuuCAAGGAcGUCa--UG- -5'
15788 3' -54.2 NC_004065.1 + 66859 0.67 0.963967
Target:  5'- cGUGCCGGGAaaucgccGAAcgaCCUGCgcgaguGGUACg -3'
miRNA:   3'- aCACGGCCCU-------CUUcaaGGACG------UCAUG- -5'
15788 3' -54.2 NC_004065.1 + 150240 0.67 0.96054
Target:  5'- -aUGCCcaagaGGGAGAAGUUCUUcucccucGUGGUGCc -3'
miRNA:   3'- acACGG-----CCCUCUUCAAGGA-------CGUCAUG- -5'
15788 3' -54.2 NC_004065.1 + 181981 0.68 0.940511
Target:  5'- gGUGUCcguGGGGGAugAGgaCCcGCAGUACg -3'
miRNA:   3'- aCACGG---CCCUCU--UCaaGGaCGUCAUG- -5'
15788 3' -54.2 NC_004065.1 + 136571 0.68 0.93574
Target:  5'- gGUaGCCGGG-GAGcuggUCCUGCGGUcCg -3'
miRNA:   3'- aCA-CGGCCCuCUUca--AGGACGUCAuG- -5'
15788 3' -54.2 NC_004065.1 + 184933 0.69 0.920008
Target:  5'- --gGCCGGGAGAcgg-UCUGCAGaGCu -3'
miRNA:   3'- acaCGGCCCUCUucaaGGACGUCaUG- -5'
15788 3' -54.2 NC_004065.1 + 83228 0.69 0.908335
Target:  5'- --cGCCGGGAGGAGcauaCUGCAcgGCg -3'
miRNA:   3'- acaCGGCCCUCUUCaag-GACGUcaUG- -5'
15788 3' -54.2 NC_004065.1 + 120235 0.69 0.902147
Target:  5'- cGUGaUCGGcGAGucucGGUUCUUGCAGUGg -3'
miRNA:   3'- aCAC-GGCC-CUCu---UCAAGGACGUCAUg -5'
15788 3' -54.2 NC_004065.1 + 37957 0.7 0.882209
Target:  5'- ---cCCGGGcGGAcAGUUCCUGCuGUGCu -3'
miRNA:   3'- acacGGCCC-UCU-UCAAGGACGuCAUG- -5'
15788 3' -54.2 NC_004065.1 + 68002 0.7 0.860291
Target:  5'- -cUGCgGGGAGGAgccGUUCUaccgGCAGUACu -3'
miRNA:   3'- acACGgCCCUCUU---CAAGGa---CGUCAUG- -5'
15788 3' -54.2 NC_004065.1 + 34450 0.71 0.819765
Target:  5'- --gGCCGGGGGAcGcgaaUCCUGCGGcGCg -3'
miRNA:   3'- acaCGGCCCUCUuCa---AGGACGUCaUG- -5'
15788 3' -54.2 NC_004065.1 + 32654 0.73 0.697322
Target:  5'- gUGUGCa-GGAGGAGUUCCUcGCGG-GCg -3'
miRNA:   3'- -ACACGgcCCUCUUCAAGGA-CGUCaUG- -5'
15788 3' -54.2 NC_004065.1 + 183553 0.76 0.535603
Target:  5'- -aUGCCGGc-GAGGUUCCUGgAGUACa -3'
miRNA:   3'- acACGGCCcuCUUCAAGGACgUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.