Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15788 | 3' | -54.2 | NC_004065.1 | + | 129071 | 1.09 | 0.005358 |
Target: 5'- cUGUGCCGGGAGAAGUUCCUGCAGUACu -3' miRNA: 3'- -ACACGGCCCUCUUCAAGGACGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 183553 | 0.76 | 0.535603 |
Target: 5'- -aUGCCGGc-GAGGUUCCUGgAGUACa -3' miRNA: 3'- acACGGCCcuCUUCAAGGACgUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 32654 | 0.73 | 0.697322 |
Target: 5'- gUGUGCa-GGAGGAGUUCCUcGCGG-GCg -3' miRNA: 3'- -ACACGgcCCUCUUCAAGGA-CGUCaUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 34450 | 0.71 | 0.819765 |
Target: 5'- --gGCCGGGGGAcGcgaaUCCUGCGGcGCg -3' miRNA: 3'- acaCGGCCCUCUuCa---AGGACGUCaUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 68002 | 0.7 | 0.860291 |
Target: 5'- -cUGCgGGGAGGAgccGUUCUaccgGCAGUACu -3' miRNA: 3'- acACGgCCCUCUU---CAAGGa---CGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 37957 | 0.7 | 0.882209 |
Target: 5'- ---cCCGGGcGGAcAGUUCCUGCuGUGCu -3' miRNA: 3'- acacGGCCC-UCU-UCAAGGACGuCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 120235 | 0.69 | 0.902147 |
Target: 5'- cGUGaUCGGcGAGucucGGUUCUUGCAGUGg -3' miRNA: 3'- aCAC-GGCC-CUCu---UCAAGGACGUCAUg -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 83228 | 0.69 | 0.908335 |
Target: 5'- --cGCCGGGAGGAGcauaCUGCAcgGCg -3' miRNA: 3'- acaCGGCCCUCUUCaag-GACGUcaUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 184933 | 0.69 | 0.920008 |
Target: 5'- --gGCCGGGAGAcgg-UCUGCAGaGCu -3' miRNA: 3'- acaCGGCCCUCUucaaGGACGUCaUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 136571 | 0.68 | 0.93574 |
Target: 5'- gGUaGCCGGG-GAGcuggUCCUGCGGUcCg -3' miRNA: 3'- aCA-CGGCCCuCUUca--AGGACGUCAuG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 181981 | 0.68 | 0.940511 |
Target: 5'- gGUGUCcguGGGGGAugAGgaCCcGCAGUACg -3' miRNA: 3'- aCACGG---CCCUCU--UCaaGGaCGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 150240 | 0.67 | 0.96054 |
Target: 5'- -aUGCCcaagaGGGAGAAGUUCUUcucccucGUGGUGCc -3' miRNA: 3'- acACGG-----CCCUCUUCAAGGA-------CGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 66859 | 0.67 | 0.963967 |
Target: 5'- cGUGCCGGGAaaucgccGAAcgaCCUGCgcgaguGGUACg -3' miRNA: 3'- aCACGGCCCU-------CUUcaaGGACG------UCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 161751 | 0.66 | 0.96749 |
Target: 5'- cGUGCCGGu-GggGUUCCUuCGGccgACc -3' miRNA: 3'- aCACGGCCcuCuuCAAGGAcGUCa--UG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 136336 | 0.66 | 0.973257 |
Target: 5'- --aGCCGGuGGGucAGUUCggCUGCAGUGg -3' miRNA: 3'- acaCGGCC-CUCu-UCAAG--GACGUCAUg -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 92479 | 0.66 | 0.975595 |
Target: 5'- aUGUGCCGGGccagaggcugaccGGAAGUcCCgccuuuugGCccGGUGCc -3' miRNA: 3'- -ACACGGCCC-------------UCUUCAaGGa-------CG--UCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 172099 | 0.66 | 0.975845 |
Target: 5'- --gGCCGGGGGAGGcggcUCUgaccGCGGUGg -3' miRNA: 3'- acaCGGCCCUCUUCa---AGGa---CGUCAUg -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 162020 | 0.66 | 0.978245 |
Target: 5'- -cUGCCGGuAGAacGGcUCCUccccGCAGUACa -3' miRNA: 3'- acACGGCCcUCU--UCaAGGA----CGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 106737 | 0.66 | 0.978245 |
Target: 5'- -cUGCauccaCGGcGAGAcGgaCCUGCAGUACa -3' miRNA: 3'- acACG-----GCC-CUCUuCaaGGACGUCAUG- -5' |
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15788 | 3' | -54.2 | NC_004065.1 | + | 145505 | 0.66 | 0.980464 |
Target: 5'- -cUGcCCGaGGAGAaccAGgccaUCCUGCAGUGu -3' miRNA: 3'- acAC-GGC-CCUCU---UCa---AGGACGUCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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