miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 89009 0.66 0.995358
Target:  5'- gGCGaACGACAcGAgguugugucucaggcAgCUGCCGGugGc -3'
miRNA:   3'- -CGCaUGCUGUuCU---------------UgGACGGCCugCu -5'
15788 5' -52.9 NC_004065.1 + 140805 0.66 0.995358
Target:  5'- --cUACGACGAGAGcgacgugguggacauCCaGCCGGACu- -3'
miRNA:   3'- cgcAUGCUGUUCUU---------------GGaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 45821 0.66 0.995079
Target:  5'- cGCGUGCGGguGGGcauguaucggACCgGCCGcACGGg -3'
miRNA:   3'- -CGCAUGCUguUCU----------UGGaCGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 69348 0.66 0.995079
Target:  5'- gGCGgAgGGCA---ACCUGCCcucGGACGAc -3'
miRNA:   3'- -CGCaUgCUGUucuUGGACGG---CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 51219 0.66 0.995079
Target:  5'- ---aGCGGCGguauGGAucCCUGCUGGAUGGc -3'
miRNA:   3'- cgcaUGCUGU----UCUu-GGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 203994 0.66 0.995079
Target:  5'- cGCGUGCGA-----GCC-GCUGGugGAc -3'
miRNA:   3'- -CGCAUGCUguucuUGGaCGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 109656 0.66 0.995079
Target:  5'- cGCGacucCGGCAGGGuCCU-CCGGGCGc -3'
miRNA:   3'- -CGCau--GCUGUUCUuGGAcGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 177489 0.66 0.995079
Target:  5'- gGCGcACGGC-GGGGCC-GCCGGGgGu -3'
miRNA:   3'- -CGCaUGCUGuUCUUGGaCGGCCUgCu -5'
15788 5' -52.9 NC_004065.1 + 91759 0.66 0.995079
Target:  5'- gGCGggaGCGACGGGGGCgagGCUGGA-GAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGga-CGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 143152 0.66 0.995079
Target:  5'- uGCGUcggugaugACGACGAGGACUUcauccuguccGCCGaGCGGc -3'
miRNA:   3'- -CGCA--------UGCUGUUCUUGGA----------CGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 130774 0.66 0.995079
Target:  5'- aCG-ACGuCGAGAACCUGCaGGcguucGCGAg -3'
miRNA:   3'- cGCaUGCuGUUCUUGGACGgCC-----UGCU- -5'
15788 5' -52.9 NC_004065.1 + 59702 0.66 0.99486
Target:  5'- cGCGgcaGCGGCAucGAugCUGCCGauguuuaccgacccGGCGGc -3'
miRNA:   3'- -CGCa--UGCUGUu-CUugGACGGC--------------CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 137009 0.66 0.99432
Target:  5'- aGCGaggGCGACGAGAuCCcGCUgaGGAcCGAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUuGGaCGG--CCU-GCU- -5'
15788 5' -52.9 NC_004065.1 + 133626 0.66 0.99432
Target:  5'- gGCGgACGACGAGGaguucGCCgaGCCGaucgaggaaGACGAc -3'
miRNA:   3'- -CGCaUGCUGUUCU-----UGGa-CGGC---------CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 199528 0.66 0.99432
Target:  5'- aCGUGCGcGCAgccgGGcGCCUccaGCCGGGCGc -3'
miRNA:   3'- cGCAUGC-UGU----UCuUGGA---CGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 91204 0.66 0.99432
Target:  5'- gGCGUgcGCGGCAucGGcGCC-GCCGGA-GAa -3'
miRNA:   3'- -CGCA--UGCUGU--UCuUGGaCGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 103745 0.66 0.99432
Target:  5'- gGCGUcgguucgcGCGGC-GGGGCCU-CCGGACc- -3'
miRNA:   3'- -CGCA--------UGCUGuUCUUGGAcGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 4382 0.66 0.99432
Target:  5'- gGCG-GCGGCGGGAGCCggagUGCUGuuCGGa -3'
miRNA:   3'- -CGCaUGCUGUUCUUGG----ACGGCcuGCU- -5'
15788 5' -52.9 NC_004065.1 + 66525 0.66 0.99432
Target:  5'- cGCuGUGCGugGAGcGCCUGCgcuucaaccgcgCGGcguGCGAg -3'
miRNA:   3'- -CG-CAUGCugUUCuUGGACG------------GCC---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 125893 0.66 0.99432
Target:  5'- gGCG-ACGACGAGGAUCcGCuCGccauGGCGAa -3'
miRNA:   3'- -CGCaUGCUGUUCUUGGaCG-GC----CUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.