miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 45821 0.66 0.995079
Target:  5'- cGCGUGCGGguGGGcauguaucggACCgGCCGcACGGg -3'
miRNA:   3'- -CGCAUGCUguUCU----------UGGaCGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 170105 0.66 0.99347
Target:  5'- cGCGaugGGCucgguGAACCUGCCGGGauCGGg -3'
miRNA:   3'- -CGCaugCUGuu---CUUGGACGGCCU--GCU- -5'
15788 5' -52.9 NC_004065.1 + 104878 0.66 0.991466
Target:  5'- -gGUGCGGCu-GAucGCCacgcgGCUGGGCGAc -3'
miRNA:   3'- cgCAUGCUGuuCU--UGGa----CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 69348 0.66 0.995079
Target:  5'- gGCGgAgGGCA---ACCUGCCcucGGACGAc -3'
miRNA:   3'- -CGCaUgCUGUucuUGGACGG---CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 59150 0.66 0.99347
Target:  5'- gGCGacgACGGCGAGAGuCCgaucggGCgCGcGGCGAa -3'
miRNA:   3'- -CGCa--UGCUGUUCUU-GGa-----CG-GC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 201790 0.66 0.99347
Target:  5'- -aGUAgGAuCAGGGgguuggucuccuGCUUGCCGGGCGu -3'
miRNA:   3'- cgCAUgCU-GUUCU------------UGGACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 66525 0.66 0.99432
Target:  5'- cGCuGUGCGugGAGcGCCUGCgcuucaaccgcgCGGcguGCGAg -3'
miRNA:   3'- -CG-CAUGCugUUCuUGGACG------------GCC---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 206435 0.66 0.992522
Target:  5'- cGUGUAacuauuCGACAAuAACCUGCUGcguacGACGAa -3'
miRNA:   3'- -CGCAU------GCUGUUcUUGGACGGC-----CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 140805 0.66 0.995358
Target:  5'- --cUACGACGAGAGcgacgugguggacauCCaGCCGGACu- -3'
miRNA:   3'- cgcAUGCUGUUCUU---------------GGaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 199528 0.66 0.99432
Target:  5'- aCGUGCGcGCAgccgGGcGCCUccaGCCGGGCGc -3'
miRNA:   3'- cGCAUGC-UGU----UCuUGGA---CGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 103745 0.66 0.99432
Target:  5'- gGCGUcgguucgcGCGGC-GGGGCCU-CCGGACc- -3'
miRNA:   3'- -CGCA--------UGCUGuUCUUGGAcGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 46472 0.66 0.992522
Target:  5'- aUGUACucCAGGAACCUcGCCGG-Ca- -3'
miRNA:   3'- cGCAUGcuGUUCUUGGA-CGGCCuGcu -5'
15788 5' -52.9 NC_004065.1 + 51219 0.66 0.995079
Target:  5'- ---aGCGGCGguauGGAucCCUGCUGGAUGGc -3'
miRNA:   3'- cgcaUGCUGU----UCUu-GGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 19740 0.66 0.992421
Target:  5'- cGCGUAUcccaggaaGACGGGGGCgUGCgggggugUGGGCGAc -3'
miRNA:   3'- -CGCAUG--------CUGUUCUUGgACG-------GCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 109656 0.66 0.995079
Target:  5'- cGCGacucCGGCAGGGuCCU-CCGGGCGc -3'
miRNA:   3'- -CGCau--GCUGUUCUuGGAcGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 22504 0.66 0.991466
Target:  5'- gGCGUGCGACuuuaAGCCccacCCGGACa- -3'
miRNA:   3'- -CGCAUGCUGuuc-UUGGac--GGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 200859 0.66 0.991466
Target:  5'- gGCGU-CGACGGGGGCgCggGCgGuGGCGAa -3'
miRNA:   3'- -CGCAuGCUGUUCUUG-Ga-CGgC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 91759 0.66 0.995079
Target:  5'- gGCGggaGCGACGGGGGCgagGCUGGA-GAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGga-CGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 91204 0.66 0.99432
Target:  5'- gGCGUgcGCGGCAucGGcGCC-GCCGGA-GAa -3'
miRNA:   3'- -CGCA--UGCUGU--UCuUGGaCGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 137009 0.66 0.99432
Target:  5'- aGCGaggGCGACGAGAuCCcGCUgaGGAcCGAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUuGGaCGG--CCU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.