miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 129109 1.11 0.007485
Target:  5'- gGCGUACGACAAGAACCUGCCGGACGAu -3'
miRNA:   3'- -CGCAUGCUGUUCUUGGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 72677 0.83 0.364765
Target:  5'- uCGUGCGGCAccuggAGAACCUGCCGaGCGAc -3'
miRNA:   3'- cGCAUGCUGU-----UCUUGGACGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 142765 0.77 0.623044
Target:  5'- cGCG-ACGACGAcGGCCUGCUGGugGu -3'
miRNA:   3'- -CGCaUGCUGUUcUUGGACGGCCugCu -5'
15788 5' -52.9 NC_004065.1 + 112558 0.75 0.722625
Target:  5'- cCGgugGCGGCGAGcGGCCgcggaGCCGGACGAc -3'
miRNA:   3'- cGCa--UGCUGUUC-UUGGa----CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 80375 0.75 0.722625
Target:  5'- cGCGcUGCGGCGcgugcAGGGCCUGCC-GACGGc -3'
miRNA:   3'- -CGC-AUGCUGU-----UCUUGGACGGcCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 42129 0.75 0.741913
Target:  5'- gGCGcACGACGGGGACaC-GCCGGACa- -3'
miRNA:   3'- -CGCaUGCUGUUCUUG-GaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 121975 0.75 0.751422
Target:  5'- uCGUACaACGAGAGCCgggugUGCCGGcACGAc -3'
miRNA:   3'- cGCAUGcUGUUCUUGG-----ACGGCC-UGCU- -5'
15788 5' -52.9 NC_004065.1 + 136947 0.75 0.751422
Target:  5'- gGCGcuacgACGGCAGGAAaggaCUGCCGGccACGAu -3'
miRNA:   3'- -CGCa----UGCUGUUCUUg---GACGGCC--UGCU- -5'
15788 5' -52.9 NC_004065.1 + 129773 0.75 0.764563
Target:  5'- cGCGUcACGAgauguucaaCGAGAACCUGCCcguguucaacuucguGGGCGAc -3'
miRNA:   3'- -CGCA-UGCU---------GUUCUUGGACGG---------------CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 114769 0.75 0.770128
Target:  5'- uGCGaugACGACGAGGAUCUcgaaGCCGG-CGAg -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGGA----CGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 57147 0.75 0.770128
Target:  5'- gGCG-ACGGCAcGGAAUCUGCCgaGGAUGAc -3'
miRNA:   3'- -CGCaUGCUGU-UCUUGGACGG--CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 62473 0.74 0.779307
Target:  5'- gGCG-ACGGCAGGAGCg-GCCGcGGCGGu -3'
miRNA:   3'- -CGCaUGCUGUUCUUGgaCGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 131471 0.74 0.788358
Target:  5'- --aUACGACGAGGACgaUGCCGcGACGGg -3'
miRNA:   3'- cgcAUGCUGUUCUUGg-ACGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 31803 0.74 0.788358
Target:  5'- gGC-UACaGGCcgGGGGGCCUGCCGGACGc -3'
miRNA:   3'- -CGcAUG-CUG--UUCUUGGACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 139678 0.74 0.796389
Target:  5'- cGCGUucaucGCGACGcggacgaguucgcGGAcgcGCUUGCCGGAUGAg -3'
miRNA:   3'- -CGCA-----UGCUGU-------------UCU---UGGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 61330 0.73 0.823125
Target:  5'- uCG-ACGGCGAGAGCCgcggcgacCCGGGCGAa -3'
miRNA:   3'- cGCaUGCUGUUCUUGGac------GGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 153243 0.73 0.823125
Target:  5'- aGCGUucgccgucGCGGCGGcGAugC-GCCGGACGAu -3'
miRNA:   3'- -CGCA--------UGCUGUU-CUugGaCGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 97986 0.73 0.854449
Target:  5'- cGUGUACGgguuggaGCAcuacuuccugaAGGACCUGCUGGACa- -3'
miRNA:   3'- -CGCAUGC-------UGU-----------UCUUGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 197413 0.73 0.855214
Target:  5'- aUGUACGACGAGcGCCcGCUGGcCGGc -3'
miRNA:   3'- cGCAUGCUGUUCuUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 103704 0.72 0.870116
Target:  5'- gGUGgGCGGCGGGGagcGCCUGgCGGGCGu -3'
miRNA:   3'- -CGCaUGCUGUUCU---UGGACgGCCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.