miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 105304 0.72 0.872999
Target:  5'- cGCGUGCGGCGcgggccugaaccugaAGcACCUGCUGG-UGAa -3'
miRNA:   3'- -CGCAUGCUGU---------------UCuUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 58959 0.72 0.875848
Target:  5'- aGCGUACGACGcaacgcaaCUGCUGGAUGGc -3'
miRNA:   3'- -CGCAUGCUGUucuug---GACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 80461 0.72 0.87726
Target:  5'- uCGUAccCGACGAGcGCgaGUCGGACGAg -3'
miRNA:   3'- cGCAU--GCUGUUCuUGgaCGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 113367 0.72 0.884193
Target:  5'- cUGUAUGACGAGGACCcucaGGACGAa -3'
miRNA:   3'- cGCAUGCUGUUCUUGGacggCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 38473 0.72 0.884193
Target:  5'- cGCGUGCGGaagaguGAGCCgcccuUGCUGGACGu -3'
miRNA:   3'- -CGCAUGCUguu---CUUGG-----ACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 140732 0.72 0.897407
Target:  5'- cCGUAUGACGAGAGuuUCUGUCGGAacaGGu -3'
miRNA:   3'- cGCAUGCUGUUCUU--GGACGGCCUg--CU- -5'
15788 5' -52.9 NC_004065.1 + 132197 0.71 0.917816
Target:  5'- aCGUACGuCAAGuuccaccgcguacacAACCUGCCGG-UGAa -3'
miRNA:   3'- cGCAUGCuGUUC---------------UUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 69133 0.71 0.917816
Target:  5'- cGCGc-CGACAAGGugCUggggaagcugucgacGCUGGACGAg -3'
miRNA:   3'- -CGCauGCUGUUCUugGA---------------CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 109839 0.71 0.921143
Target:  5'- uGC-UGCGGCgGGGGGCCaucgcgcaggUGCCGGGCGGu -3'
miRNA:   3'- -CGcAUGCUG-UUCUUGG----------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 139862 0.71 0.926504
Target:  5'- gGCGgagGCGGC-GGAGCCggcgGCaggaCGGACGAg -3'
miRNA:   3'- -CGCa--UGCUGuUCUUGGa---CG----GCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 203125 0.7 0.931634
Target:  5'- gGCGUGCGGuCGAGcggccucugGACCgGCCGG-CGGu -3'
miRNA:   3'- -CGCAUGCU-GUUC---------UUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 71823 0.7 0.931634
Target:  5'- -gGUACGACAuacgcGAG-CUGCUGGugGAg -3'
miRNA:   3'- cgCAUGCUGUu----CUUgGACGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 60318 0.7 0.936533
Target:  5'- cGCGauagaGCGuCAGGAGCUUGCCGG-CGc -3'
miRNA:   3'- -CGCa----UGCuGUUCUUGGACGGCCuGCu -5'
15788 5' -52.9 NC_004065.1 + 134874 0.7 0.936533
Target:  5'- gGCGgcgGCGACGAGAACUgucGCuaCGGACu- -3'
miRNA:   3'- -CGCa--UGCUGUUCUUGGa--CG--GCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 68110 0.7 0.936533
Target:  5'- gGCGgugcaGCGGuuCGAGAGCCugaugggucUGUCGGACGAg -3'
miRNA:   3'- -CGCa----UGCU--GUUCUUGG---------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 77046 0.7 0.936533
Target:  5'- cGCGgaucgGCGACGAGAACacgGCCGaGauccGCGAg -3'
miRNA:   3'- -CGCa----UGCUGUUCUUGga-CGGC-C----UGCU- -5'
15788 5' -52.9 NC_004065.1 + 124952 0.7 0.936533
Target:  5'- cGCGUugcGCGGC-AGcGCCUGCacgaaGGGCGGc -3'
miRNA:   3'- -CGCA---UGCUGuUCuUGGACGg----CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 107788 0.7 0.936533
Target:  5'- aGCG-GCGACAGGAacgACCcGCCGGcccgcuCGAg -3'
miRNA:   3'- -CGCaUGCUGUUCU---UGGaCGGCCu-----GCU- -5'
15788 5' -52.9 NC_004065.1 + 111297 0.7 0.936533
Target:  5'- cCG-ACuGCGAG-ACCUGCCGGACa- -3'
miRNA:   3'- cGCaUGcUGUUCuUGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 223808 0.7 0.945644
Target:  5'- -gGUGCGGCAgauAGAAcacgacCCUGUCGGAgGAc -3'
miRNA:   3'- cgCAUGCUGU---UCUU------GGACGGCCUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.