miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 66525 0.66 0.99432
Target:  5'- cGCuGUGCGugGAGcGCCUGCgcuucaaccgcgCGGcguGCGAg -3'
miRNA:   3'- -CG-CAUGCugUUCuUGGACG------------GCC---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 78034 0.66 0.99347
Target:  5'- gGCGUGCGcCGGGucCCUgaugagGCCGG-CGGg -3'
miRNA:   3'- -CGCAUGCuGUUCuuGGA------CGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 109381 0.66 0.99347
Target:  5'- cGCGUGaagaaGACAAGc-CCgucgGCCGcGGCGGa -3'
miRNA:   3'- -CGCAUg----CUGUUCuuGGa---CGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 6259 0.66 0.99347
Target:  5'- uCGUGCGGCGGGGACgagagggaGCC-GACGAa -3'
miRNA:   3'- cGCAUGCUGUUCUUGga------CGGcCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 201790 0.66 0.99347
Target:  5'- -aGUAgGAuCAGGGgguuggucuccuGCUUGCCGGGCGu -3'
miRNA:   3'- cgCAUgCU-GUUCU------------UGGACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 170105 0.66 0.99347
Target:  5'- cGCGaugGGCucgguGAACCUGCCGGGauCGGg -3'
miRNA:   3'- -CGCaugCUGuu---CUUGGACGGCCU--GCU- -5'
15788 5' -52.9 NC_004065.1 + 59150 0.66 0.99347
Target:  5'- gGCGacgACGGCGAGAGuCCgaucggGCgCGcGGCGAa -3'
miRNA:   3'- -CGCa--UGCUGUUCUU-GGa-----CG-GC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 117143 0.66 0.99338
Target:  5'- aCGga-GACGGGccuGGCCcugagucUGCCGGACGAg -3'
miRNA:   3'- cGCaugCUGUUC---UUGG-------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 67627 0.66 0.992522
Target:  5'- cCGUACGGCGuucGAGa-UGCCGGugGc -3'
miRNA:   3'- cGCAUGCUGUu--CUUggACGGCCugCu -5'
15788 5' -52.9 NC_004065.1 + 50013 0.66 0.992522
Target:  5'- aGCuGUugGugGugucacucaagaGGAACCUGCUGG-UGAa -3'
miRNA:   3'- -CG-CAugCugU------------UCUUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 46472 0.66 0.992522
Target:  5'- aUGUACucCAGGAACCUcGCCGG-Ca- -3'
miRNA:   3'- cGCAUGcuGUUCUUGGA-CGGCCuGcu -5'
15788 5' -52.9 NC_004065.1 + 206435 0.66 0.992522
Target:  5'- cGUGUAacuauuCGACAAuAACCUGCUGcguacGACGAa -3'
miRNA:   3'- -CGCAU------GCUGUUcUUGGACGGC-----CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 53394 0.66 0.992522
Target:  5'- uCGUACGugGAGGc---GCCGGGCGc -3'
miRNA:   3'- cGCAUGCugUUCUuggaCGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 19740 0.66 0.992421
Target:  5'- cGCGUAUcccaggaaGACGGGGGCgUGCgggggugUGGGCGAc -3'
miRNA:   3'- -CGCAUG--------CUGUUCUUGgACG-------GCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 104878 0.66 0.991466
Target:  5'- -gGUGCGGCu-GAucGCCacgcgGCUGGGCGAc -3'
miRNA:   3'- cgCAUGCUGuuCU--UGGa----CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 200859 0.66 0.991466
Target:  5'- gGCGU-CGACGGGGGCgCggGCgGuGGCGAa -3'
miRNA:   3'- -CGCAuGCUGUUCUUG-Ga-CGgC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 111709 0.66 0.991466
Target:  5'- gGCGgucccgcugGCGACGAGAAC--GCCgaugaGGACGAu -3'
miRNA:   3'- -CGCa--------UGCUGUUCUUGgaCGG-----CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 22504 0.66 0.991466
Target:  5'- gGCGUGCGACuuuaAGCCccacCCGGACa- -3'
miRNA:   3'- -CGCAUGCUGuuc-UUGGac--GGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 128380 0.67 0.990296
Target:  5'- gGCuucgGCGGCGAGAGCCggcuguggggGCCGaGCGGc -3'
miRNA:   3'- -CGca--UGCUGUUCUUGGa---------CGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 75804 0.67 0.990296
Target:  5'- aGCG-GCGGCGAGGcACCUGgCacGACGAc -3'
miRNA:   3'- -CGCaUGCUGUUCU-UGGACgGc-CUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.