miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 136664 0.67 0.990296
Target:  5'- gGCGaGCGACGGgcGggUCUgGCCGGcgGCGGg -3'
miRNA:   3'- -CGCaUGCUGUU--CuuGGA-CGGCC--UGCU- -5'
15788 5' -52.9 NC_004065.1 + 67433 0.67 0.989004
Target:  5'- cGUGUucgacccgcacACGAC--GGACCUGUCGGcCGAg -3'
miRNA:   3'- -CGCA-----------UGCUGuuCUUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 25748 0.67 0.989004
Target:  5'- aCGU-CGACGAGGACCagggUGUCGucGGCGAc -3'
miRNA:   3'- cGCAuGCUGUUCUUGG----ACGGC--CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 108672 0.67 0.989004
Target:  5'- cCGUGCGGau-GGACCUGCUGuGCGu -3'
miRNA:   3'- cGCAUGCUguuCUUGGACGGCcUGCu -5'
15788 5' -52.9 NC_004065.1 + 110188 0.67 0.989004
Target:  5'- gGUGggcuCGACgAAGAuCCUGCUGG-CGAg -3'
miRNA:   3'- -CGCau--GCUG-UUCUuGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 31856 0.67 0.988167
Target:  5'- cGUGgcCGACAAGuucggggccguguacAGCCUGCUGGuguacuCGAg -3'
miRNA:   3'- -CGCauGCUGUUC---------------UUGGACGGCCu-----GCU- -5'
15788 5' -52.9 NC_004065.1 + 95382 0.67 0.987582
Target:  5'- cGUGUAcCGGCAcGAGCCUGUCGcGGuCGu -3'
miRNA:   3'- -CGCAU-GCUGUuCUUGGACGGC-CU-GCu -5'
15788 5' -52.9 NC_004065.1 + 6509 0.67 0.987582
Target:  5'- cGCGgcCGGCAcuAGAuccCCUGaCCGG-CGAu -3'
miRNA:   3'- -CGCauGCUGU--UCUu--GGAC-GGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 33411 0.67 0.987582
Target:  5'- cCGU-CGAaccuGAagGCCUGCCuGGACGAg -3'
miRNA:   3'- cGCAuGCUguu-CU--UGGACGG-CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 200828 0.67 0.987582
Target:  5'- aCGggGCGACGGGGACgacCCGGugGAg -3'
miRNA:   3'- cGCa-UGCUGUUCUUGgacGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 111983 0.67 0.987432
Target:  5'- cGUGUACGACGAGcagggccGCCUGauCCuccgucgggaggaGGACGAg -3'
miRNA:   3'- -CGCAUGCUGUUCu------UGGAC--GG-------------CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 119455 0.67 0.987128
Target:  5'- aGCGUGaugGACAAcAGCCUGCCGaucccguucucgcaGugGAa -3'
miRNA:   3'- -CGCAUg--CUGUUcUUGGACGGC--------------CugCU- -5'
15788 5' -52.9 NC_004065.1 + 170375 0.67 0.986021
Target:  5'- gGCGUGCucCGAG-ACCgGCUGGACc- -3'
miRNA:   3'- -CGCAUGcuGUUCuUGGaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 141603 0.67 0.984315
Target:  5'- cGCGacgGCGGCGGGcuCCgcUGCCGG-CGGu -3'
miRNA:   3'- -CGCa--UGCUGUUCuuGG--ACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 170181 0.67 0.984315
Target:  5'- uGCGUGCGcuccguCAAGAucgagccccaucGCCUGCacgaGGAgGAu -3'
miRNA:   3'- -CGCAUGCu-----GUUCU------------UGGACGg---CCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 188068 0.67 0.984315
Target:  5'- aGCGccaGCGuCGAGAACCcgGCCGuGcACGAc -3'
miRNA:   3'- -CGCa--UGCuGUUCUUGGa-CGGC-C-UGCU- -5'
15788 5' -52.9 NC_004065.1 + 46291 0.67 0.984315
Target:  5'- cGUGgGCGACcuGGACCUGUCucaGGGCGc -3'
miRNA:   3'- -CGCaUGCUGuuCUUGGACGG---CCUGCu -5'
15788 5' -52.9 NC_004065.1 + 200198 0.67 0.984315
Target:  5'- ---aACGACGccucGGAAUCU-CCGGACGAc -3'
miRNA:   3'- cgcaUGCUGU----UCUUGGAcGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 69426 0.67 0.984315
Target:  5'- -gGUGCG-CGccGACCUGCUGGACu- -3'
miRNA:   3'- cgCAUGCuGUucUUGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 229320 0.68 0.982455
Target:  5'- cGCGuUACGACGGGcAUCUcgaaacCCGGGCGGu -3'
miRNA:   3'- -CGC-AUGCUGUUCuUGGAc-----GGCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.