miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 856 0.66 0.99432
Target:  5'- cGCGgaGCG-CAuGA--CUGCCGGGCGAg -3'
miRNA:   3'- -CGCa-UGCuGUuCUugGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 3632 0.69 0.957622
Target:  5'- aCGUACGA--AGAACCUGUUgaaagucaaGGACGGa -3'
miRNA:   3'- cGCAUGCUguUCUUGGACGG---------CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 4382 0.66 0.99432
Target:  5'- gGCG-GCGGCGGGAGCCggagUGCUGuuCGGa -3'
miRNA:   3'- -CGCaUGCUGUUCUUGG----ACGGCcuGCU- -5'
15788 5' -52.9 NC_004065.1 + 6259 0.66 0.99347
Target:  5'- uCGUGCGGCGGGGACgagagggaGCC-GACGAa -3'
miRNA:   3'- cGCAUGCUGUUCUUGga------CGGcCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 6509 0.67 0.987582
Target:  5'- cGCGgcCGGCAcuAGAuccCCUGaCCGG-CGAu -3'
miRNA:   3'- -CGCauGCUGU--UCUu--GGAC-GGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 17940 0.69 0.957622
Target:  5'- -gGUACGAUggGGucGCaggucGCCGGACGGu -3'
miRNA:   3'- cgCAUGCUGuuCU--UGga---CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 19740 0.66 0.992421
Target:  5'- cGCGUAUcccaggaaGACGGGGGCgUGCgggggugUGGGCGAc -3'
miRNA:   3'- -CGCAUG--------CUGUUCUUGgACG-------GCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 22391 0.69 0.966426
Target:  5'- cGCGUGCGGCAuGGAGCUgucccuggucaccGUCGuGGCGAu -3'
miRNA:   3'- -CGCAUGCUGU-UCUUGGa------------CGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 22504 0.66 0.991466
Target:  5'- gGCGUGCGACuuuaAGCCccacCCGGACa- -3'
miRNA:   3'- -CGCAUGCUGuuc-UUGGac--GGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 25748 0.67 0.989004
Target:  5'- aCGU-CGACGAGGACCagggUGUCGucGGCGAc -3'
miRNA:   3'- cGCAuGCUGUUCUUGG----ACGGC--CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 30167 0.69 0.957622
Target:  5'- uGCGgcacCGACGAGuGCCUGCggCGGugGu -3'
miRNA:   3'- -CGCau--GCUGUUCuUGGACG--GCCugCu -5'
15788 5' -52.9 NC_004065.1 + 31803 0.74 0.788358
Target:  5'- gGC-UACaGGCcgGGGGGCCUGCCGGACGc -3'
miRNA:   3'- -CGcAUG-CUG--UUCUUGGACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 31856 0.67 0.988167
Target:  5'- cGUGgcCGACAAGuucggggccguguacAGCCUGCUGGuguacuCGAg -3'
miRNA:   3'- -CGCauGCUGUUC---------------UUGGACGGCCu-----GCU- -5'
15788 5' -52.9 NC_004065.1 + 33411 0.67 0.987582
Target:  5'- cCGU-CGAaccuGAagGCCUGCCuGGACGAg -3'
miRNA:   3'- cGCAuGCUguu-CU--UGGACGG-CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 36106 0.68 0.97059
Target:  5'- cCGUgGCGGCAacGGGGCCgcUGCCGGcgGCGGu -3'
miRNA:   3'- cGCA-UGCUGU--UCUUGG--ACGGCC--UGCU- -5'
15788 5' -52.9 NC_004065.1 + 38473 0.72 0.884193
Target:  5'- cGCGUGCGGaagaguGAGCCgcccuUGCUGGACGu -3'
miRNA:   3'- -CGCAUGCUguu---CUUGG-----ACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 39016 0.68 0.973329
Target:  5'- cCGUGCuACu-GGcCCUGCUGGGCGAa -3'
miRNA:   3'- cGCAUGcUGuuCUuGGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 42129 0.75 0.741913
Target:  5'- gGCGcACGACGGGGACaC-GCCGGACa- -3'
miRNA:   3'- -CGCaUGCUGUUCUUG-GaCGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 45821 0.66 0.995079
Target:  5'- cGCGUGCGGguGGGcauguaucggACCgGCCGcACGGg -3'
miRNA:   3'- -CGCAUGCUguUCU----------UGGaCGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 46291 0.67 0.984315
Target:  5'- cGUGgGCGACcuGGACCUGUCucaGGGCGc -3'
miRNA:   3'- -CGCaUGCUGuuCUUGGACGG---CCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.