miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 46472 0.66 0.992522
Target:  5'- aUGUACucCAGGAACCUcGCCGG-Ca- -3'
miRNA:   3'- cGCAUGcuGUUCUUGGA-CGGCCuGcu -5'
15788 5' -52.9 NC_004065.1 + 48398 0.68 0.973329
Target:  5'- -gGUGCug-GAGAACCU-CCGGACGAc -3'
miRNA:   3'- cgCAUGcugUUCUUGGAcGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 50013 0.66 0.992522
Target:  5'- aGCuGUugGugGugucacucaagaGGAACCUGCUGG-UGAa -3'
miRNA:   3'- -CG-CAugCugU------------UCUUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 51219 0.66 0.995079
Target:  5'- ---aGCGGCGguauGGAucCCUGCUGGAUGGc -3'
miRNA:   3'- cgcaUGCUGU----UCUu-GGACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 53394 0.66 0.992522
Target:  5'- uCGUACGugGAGGc---GCCGGGCGc -3'
miRNA:   3'- cGCAUGCugUUCUuggaCGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 57147 0.75 0.770128
Target:  5'- gGCG-ACGGCAcGGAAUCUGCCgaGGAUGAc -3'
miRNA:   3'- -CGCaUGCUGU-UCUUGGACGG--CCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 58959 0.72 0.875848
Target:  5'- aGCGUACGACGcaacgcaaCUGCUGGAUGGc -3'
miRNA:   3'- -CGCAUGCUGUucuug---GACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 59150 0.66 0.99347
Target:  5'- gGCGacgACGGCGAGAGuCCgaucggGCgCGcGGCGAa -3'
miRNA:   3'- -CGCa--UGCUGUUCUU-GGa-----CG-GC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 59702 0.66 0.99486
Target:  5'- cGCGgcaGCGGCAucGAugCUGCCGauguuuaccgacccGGCGGc -3'
miRNA:   3'- -CGCa--UGCUGUu-CUugGACGGC--------------CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 60318 0.7 0.936533
Target:  5'- cGCGauagaGCGuCAGGAGCUUGCCGG-CGc -3'
miRNA:   3'- -CGCa----UGCuGUUCUUGGACGGCCuGCu -5'
15788 5' -52.9 NC_004065.1 + 61330 0.73 0.823125
Target:  5'- uCG-ACGGCGAGAGCCgcggcgacCCGGGCGAa -3'
miRNA:   3'- cGCaUGCUGUUCUUGGac------GGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 62473 0.74 0.779307
Target:  5'- gGCG-ACGGCAGGAGCg-GCCGcGGCGGu -3'
miRNA:   3'- -CGCaUGCUGUUCUUGgaCGGC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 63050 0.69 0.953851
Target:  5'- cGCGagGCGACGAucccGGACCUGCUGucgcGCGAg -3'
miRNA:   3'- -CGCa-UGCUGUU----CUUGGACGGCc---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 66525 0.66 0.99432
Target:  5'- cGCuGUGCGugGAGcGCCUGCgcuucaaccgcgCGGcguGCGAg -3'
miRNA:   3'- -CG-CAUGCugUUCuUGGACG------------GCC---UGCU- -5'
15788 5' -52.9 NC_004065.1 + 66575 0.69 0.96452
Target:  5'- uCGUcGCuGGCGAGcGCCUGCCGcACGAu -3'
miRNA:   3'- cGCA-UG-CUGUUCuUGGACGGCcUGCU- -5'
15788 5' -52.9 NC_004065.1 + 67433 0.67 0.989004
Target:  5'- cGUGUucgacccgcacACGAC--GGACCUGUCGGcCGAg -3'
miRNA:   3'- -CGCA-----------UGCUGuuCUUGGACGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 67627 0.66 0.992522
Target:  5'- cCGUACGGCGuucGAGa-UGCCGGugGc -3'
miRNA:   3'- cGCAUGCUGUu--CUUggACGGCCugCu -5'
15788 5' -52.9 NC_004065.1 + 68110 0.7 0.936533
Target:  5'- gGCGgugcaGCGGuuCGAGAGCCugaugggucUGUCGGACGAg -3'
miRNA:   3'- -CGCa----UGCU--GUUCUUGG---------ACGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 69133 0.71 0.917816
Target:  5'- cGCGc-CGACAAGGugCUggggaagcugucgacGCUGGACGAg -3'
miRNA:   3'- -CGCauGCUGUUCUugGA---------------CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 69348 0.66 0.995079
Target:  5'- gGCGgAgGGCA---ACCUGCCcucGGACGAc -3'
miRNA:   3'- -CGCaUgCUGUucuUGGACGG---CCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.