miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15788 5' -52.9 NC_004065.1 + 229320 0.68 0.982455
Target:  5'- cGCGuUACGACGGGcAUCUcgaaacCCGGGCGGu -3'
miRNA:   3'- -CGC-AUGCUGUUCuUGGAc-----GGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 223808 0.7 0.945644
Target:  5'- -gGUGCGGCAgauAGAAcacgacCCUGUCGGAgGAc -3'
miRNA:   3'- cgCAUGCUGU---UCUU------GGACGGCCUgCU- -5'
15788 5' -52.9 NC_004065.1 + 210703 0.68 0.975878
Target:  5'- aGCGUGCGuccuccgggUAGGAugacGCCcgucGCCGGACGGu -3'
miRNA:   3'- -CGCAUGCu--------GUUCU----UGGa---CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 206435 0.66 0.992522
Target:  5'- cGUGUAacuauuCGACAAuAACCUGCUGcguacGACGAa -3'
miRNA:   3'- -CGCAU------GCUGUUcUUGGACGGC-----CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 203994 0.66 0.995079
Target:  5'- cGCGUGCGA-----GCC-GCUGGugGAc -3'
miRNA:   3'- -CGCAUGCUguucuUGGaCGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 203125 0.7 0.931634
Target:  5'- gGCGUGCGGuCGAGcggccucugGACCgGCCGG-CGGu -3'
miRNA:   3'- -CGCAUGCU-GUUC---------UUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 201790 0.66 0.99347
Target:  5'- -aGUAgGAuCAGGGgguuggucuccuGCUUGCCGGGCGu -3'
miRNA:   3'- cgCAUgCU-GUUCU------------UGGACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 200859 0.66 0.991466
Target:  5'- gGCGU-CGACGGGGGCgCggGCgGuGGCGAa -3'
miRNA:   3'- -CGCAuGCUGUUCUUG-Ga-CGgC-CUGCU- -5'
15788 5' -52.9 NC_004065.1 + 200828 0.67 0.987582
Target:  5'- aCGggGCGACGGGGACgacCCGGugGAg -3'
miRNA:   3'- cGCa-UGCUGUUCUUGgacGGCCugCU- -5'
15788 5' -52.9 NC_004065.1 + 200335 0.68 0.970306
Target:  5'- cCGUcgggGCGcCGAGGcucagcaACCUGCCGGACu- -3'
miRNA:   3'- cGCA----UGCuGUUCU-------UGGACGGCCUGcu -5'
15788 5' -52.9 NC_004065.1 + 200198 0.67 0.984315
Target:  5'- ---aACGACGccucGGAAUCU-CCGGACGAc -3'
miRNA:   3'- cgcaUGCUGU----UCUUGGAcGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 199528 0.66 0.99432
Target:  5'- aCGUGCGcGCAgccgGGcGCCUccaGCCGGGCGc -3'
miRNA:   3'- cGCAUGC-UGU----UCuUGGA---CGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 197413 0.73 0.855214
Target:  5'- aUGUACGACGAGcGCCcGCUGGcCGGc -3'
miRNA:   3'- cGCAUGCUGUUCuUGGaCGGCCuGCU- -5'
15788 5' -52.9 NC_004065.1 + 188068 0.67 0.984315
Target:  5'- aGCGccaGCGuCGAGAACCcgGCCGuGcACGAc -3'
miRNA:   3'- -CGCa--UGCuGUUCUUGGa-CGGC-C-UGCU- -5'
15788 5' -52.9 NC_004065.1 + 186751 0.68 0.975878
Target:  5'- cGCGggucgACGACGacgacuuggAGAAgCUGCgCGGGCGc -3'
miRNA:   3'- -CGCa----UGCUGU---------UCUUgGACG-GCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 179551 0.69 0.957622
Target:  5'- uGCGgugaugACGACGAGcAUCgUGCUGGGCGc -3'
miRNA:   3'- -CGCa-----UGCUGUUCuUGG-ACGGCCUGCu -5'
15788 5' -52.9 NC_004065.1 + 177489 0.66 0.995079
Target:  5'- gGCGcACGGC-GGGGCC-GCCGGGgGu -3'
miRNA:   3'- -CGCaUGCUGuUCUUGGaCGGCCUgCu -5'
15788 5' -52.9 NC_004065.1 + 175737 0.68 0.969731
Target:  5'- gGCGgagACGAUuAGAcuugaggaggaacgACCggucGCCGGACGGg -3'
miRNA:   3'- -CGCa--UGCUGuUCU--------------UGGa---CGGCCUGCU- -5'
15788 5' -52.9 NC_004065.1 + 174138 0.69 0.953851
Target:  5'- -gGUGCGGCAucGGCCUggacGCCGGAuCGAc -3'
miRNA:   3'- cgCAUGCUGUucUUGGA----CGGCCU-GCU- -5'
15788 5' -52.9 NC_004065.1 + 173639 0.68 0.978244
Target:  5'- cGCGUcCGACc-GAAUgUGUCGGAUGGu -3'
miRNA:   3'- -CGCAuGCUGuuCUUGgACGGCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.